Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03340 ATGGAGAATCAGTCCTCAAATGGAAGAAGGGCAATATTGGAAGAAGAGCTGATCAAAGGTCGTGACATAGCAAACCAATTACTTGAAGTACTCGTTCATAAATCCAACACTCATCATCATGGAGATGTGGAAGGGTCAATGCAACCATATGTTGAAGATCTTGTTCGCAAGGTGCTGTGTTCATTCACAAATACCCTTTTGCTTTTGAACACTAATAATGATGTCTCCAATGATGTTCTTGATCCTATCATTATCAAAGATGTCCCTTTGTCCGTGAAATGCCCAAAGCATCAGGAACAGGATACGGATGAGGCTTGCAAGAGTCTCTTCCATGCTAAAAGAAGAAGAGGGTGCTACAAGAGAAAATCAAGTGCACCAACATGGGAGACGAACAGCTCAATTCTGATGGAAGATGGCTATGTATGGAGAAAGTATGGACAAAAGATAACAATGAATGCAAAATACCTCAGGAGCTACTACAGATGCACTCACAAATATGATGAGGGTTGTCCAGCAATCAAACAGGTTCAGAGAATTCAAGAGGACCCTCCATTGTACCGGACAACTTATTATGGCCATCACAATTGCAAAAGCTCTTTAAGTCCTCAGATAATGATGGAACCAGCTTCTTCATCTGGCTCTTCTATGTTACTTAGCTTCAGTAACACCTTCACAAGCAAAGAAGAATACCCATTTTCATCATCACTTTCTCCATCCACGAAACTGCAGCCTATGGAAGTGATTCCGGATGACCATATTGTTCACAACCAATTACACTCATCAGATTACCTCCTGTTATGTGACTATGAACTTGATTTCAATTATTCGAGGCATGTTACTATGCTATCATCCGCAGAATCTGTTCAATTAGTTAATGGGAGCAGTTTTTATTTTGATGGCTAG 903 0.4031 MENQSSNGRRAILEEELIKGRDIANQLLEVLVHKSNTHHHGDVEGSMQPYVEDLVRKVLCSFTNTLLLLNTNNDVSNDVLDPIIIKDVPLSVKCPKHQEQDTDEACKSLFHAKRRRGCYKRKSSAPTWETNSSILMEDGYVWRKYGQKITMNAKYLRSYYRCTHKYDEGCPAIKQVQRIQEDPPLYRTTYYGHHNCKSSLSPQIMMEPASSSGSSMLLSFSNTFTSKEEYPFSSSLSPSTKLQPMEVIPDDHIVHNQLHSSDYLLLCDYELDFNYSRHVTMLSSAESVQLVNGSSFYFDG 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03340 300 Gene3D WRKY domain 111 199 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo4g03340 300 Pfam WRKY DNA -binding domain 137 197 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo4g03340 300 SMART WRKY_cls 136 198 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo4g03340 300 ProSiteProfiles WRKY domain profile. 131 199 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo4g03340 300 SUPERFAMILY WRKY DNA-binding domain 132 197 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo4g03340 300 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 31 214 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03340 Pumo-Chr4 70584822 70615925 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03340 16 199 WRKY Transcription Factor Family AT3G56400 36.757 1.61e-35 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pumo4g03340 WRKY 2.5e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03340 - - gmx:102659367 419.853