Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03338 ATGAATGCAAAATACCTCAGGAGCTACTACAGATGCACTCACAAATATGATGAGGGTTGTCCAGCAATCAAACAGGTTCAGAGAATTCAAGAGGACCCTCCATTGTACCGGACAACATATTATGGCCATCACAATTGCAAAAGCTCTTTAAGTCCTCAGATAATGATGGAACCAGCTTCTTCTTCTGGCTCTTGTATGTTTCTTAGCTTCGGAGCCTATGGAAGAAATGATTCCGGATGA 240 0.4208 MNAKYLRSYYRCTHKYDEGCPAIKQVQRIQEDPPLYRTTYYGHHNCKSSLSPQIMMEPASSSGSCMFLSFGAYGRNDSG 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03338 79 Gene3D WRKY domain 1 49 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo4g03338 79 SMART WRKY_cls 2 48 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo4g03338 79 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 2 53 IPR044810 GO:0003700
Pumo4g03338 79 ProSiteProfiles WRKY domain profile. 1 49 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo4g03338 79 SUPERFAMILY WRKY DNA-binding domain 2 47 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo4g03338 79 Pfam WRKY DNA -binding domain 2 47 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03338 Pumo-Chr4 70548734 70549137 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03338 1 49 WRKY Transcription Factor Family AT3G56400 51.020 1.28e-15 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pumo4g03338 WRKY 2.6e-15 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03338 - - ccaj:109794623 141.354