Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03337 ATGACGTTGCACGCCAAATACCTCAGGACCTACTATAGGTGCACTAACAAGAATGATCAGGGATGCCAAGCAATAAAACAGGTTCAAAGAATTCAAGATGACCCTCCTTTGTACCGAACAACCTATTATGGCCATCACACTTGTAAAAGCCCTTTGAATCCCGAGATTATTTTGGAACCTCTTTCTCCCTCTGCCTCTTCCATATTACTTAGCTTCAATAATAACAGCCTTCAAAGCACACAAGAAAACCCCTTTTCCTCATCACTACTTGCATCAACGAAACATGAGCCCCATGAAGTGGCTAACGTCACAGTTGGAGGCCCTTTACGCAATCCAGTTATGTCACTCTGCACCTTCATTGGTTGTCTCACACGTGGCCTTGGAGAGTGGGAAAATTAG 399 0.4411 MTLHAKYLRTYYRCTNKNDQGCQAIKQVQRIQDDPPLYRTTYYGHHTCKSPLNPEIILEPLSPSASSILLSFNNNSLQSTQENPFSSSLLASTKHEPHEVANVTVGGPLRNPVMSLCTFIGCLTRGLGEWEN 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03337 132 ProSiteProfiles WRKY domain profile. 9 51 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo4g03337 132 Gene3D WRKY domain 1 52 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo4g03337 132 Pfam WRKY DNA -binding domain 4 49 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo4g03337 132 SUPERFAMILY WRKY DNA-binding domain 4 51 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo4g03337 132 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 4 79 IPR044810 GO:0003700
Pumo4g03337 132 SMART WRKY_cls 1 50 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03337 Pumo-Chr4 70533601 70539959 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03337 9 96 WRKY Transcription Factor Family AT5G22570 40.217 2.43e-18 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pumo4g03337 WRKY 7.3e-14 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03337 - - gmx:100792193 161.77