LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo4g03313	ATGGTTACGAGTATTGATCTCAAGCTCCGAGTCCTCAGCTTGAAGCTAGCAGAGAGGGACCAAATTGAATATATTTTGTGTTCTTTGACGGGTGAAGGTGATGGTGGGGCTATGAGGATTTTGGATATGCTTCTTACATCCAACTATTTTACCGGAAATTTACCTGCAACATTTGCTAGGCTTACTACACTAAAGCACCTTAGACTGGGCGACAATCAATTCTCTGGAACTTTACCTAATTTCATTCAAAGCTGGACAAGTCTAGAGATATTGGTTATGCAAGGGAGTGGTTTTAGTGGGCCAATTCCTTTTGGAATTTCATTTTTAAACAACCTCACTGATTTGAGAATTAGTGACGTGAAGGGACCAGATTCTCAATTTCCCCAAATTGAAAACTTGAAAAAATTGCAAACACTAGTATTGAGGAGTTGCAATCTTACAGGAACGGTTCCTAAATATCTTGGAAATATGACTAGTTTAAAAGCATTAGACCTCAGTTTTAACAAATTAACTGGACAGATTCCAAGAACCTTGGGTGACTTAAAGGATATAAATTTATTATACTTAACTGGAAACAATTTTACTGGAACACTACCCAATGGGATAGGTAAACCGGACTACACAGATCTCTCATATAACAATTTGAACATTGAAAACGCAGAGCAATTGACATGTCAACAGGGACGCGTGAACTTATTTGCAGCATCTTTGAAGGGAAATAACTTGGGAACAATTCCATGTTTGGGAAACATTAATTGTCCTAAAACTTGGTACTCTCTTCGTATAAATTGTGGTGGGAAGCTTATTTCTAATGGAAGCATGACATATGATGATGATTCAAAAGAAGCTGGATCAGCAAATTATTTTCGGAGTGAATCAAACTGGGTATTGAGCAACACAGGTCATTTCTTTGATATGGGTCCCCCAGACTACTATAATTGGTCTATTACAACTAAGCTTGCTATGGAAAATGGTGAACTATATATGGATGCACGTGTTTCTGCCCTTTCTCTCACATATTATGGATTTTGCATGGGAAATGGAAACTACACAGTAAGTCTTCATTTTGCAGAAATAATGTTCACCAATGATCAAACATATAGCAGCCTCGGAAGGCGTGTATTTGACATCTATATTCAGAGAAAGTTGGTGCAGGAGGATTTTAATATTGCGAAAGAAGCAGGAGGAGTTGTACAGTTAGAGATTCGCTTGCAGTGGGCTGGGAAAGGGACAACCGCTATCCCATTTGGATCAGTTCATGGTCCTCTTATATCAGCTATATCTGTTAATCCAAACTTTACACCGCCAGTGGAAAATGGAGGTGGCATACCTGTGCAATCTATTGTTGCAATTGTAGTTGCAGGAGCACTTATTATCATCACAGTATTTGGTATAGCTTGGTGGAAAGGATGTCTAGGACAGAAAAATTCATTAGAAAGAGAGTTAAAGGATTTAAATATACAAATGGGTTTCTTTACTATGCGTCAAATCAAAGTTGCAACAAATAACTTTGATATTTCCAATAAGATTGGAGAAGGAGGCTTTGGTCCAGTCTATAAGGGCATTTTATCAAACGACATGATAATAGCTGTCAAGATGCTTTCATCTAAGTCAAAGCAAGGAAATCGTGAGTTTATCAATGAGATAGGCTTGATTTCAGCTTTGCAACACCCTTGTCTTGTGAAACTTTATGGTTGTTGTGTTGAGGGAGATCAGTTGTTGTTGGTATACGAATATATGGAAAACAATAGCCTTGCCAATGCTTTATTTGGTAATGGAGAATCTTGTTTAAGATTGGATTGGCCAACAAGGCATAAGATCTGTGTTGGTATTGCAAGAGGTTTGGCTTTTCTACATGAGGAATCAAGATTAAAAATTGTTCACAGGGACATTAAGGCCACTAATGTGTTGCTAGACAAAGACTTAAACCCAAAGATATCTGATTTTGGTCTAGCTAAGCTCGACGAGGAGGACAATACTCATATAAGCACACGAATAGCTGGGACTTATGGATATATGGCTCCAGAGTATGCAATGCATGGTTATTTGACTGACAAAGCAGATGTCTATAGTTTTGGAGTTGTTGCCTTGGAAATTATAACTGGAAAGAGCAACATCATGCACCGACCCAAGCAAGAAGCATTGCATCTTCTAGATTGGGCACATTTATTGAATGAGAAAGGTAACCTAATGGAGCTAGTTGATAGAAGGCTAGGTTCAAATTTTAATGAAGATGAGGTAATGATGATGATCAAAGTGGCTCTCCTATGCACCAATGCCACTTCAAACCTTAGGCCTACCATGTCATCGGTGCTTAGCATGCTTGAAGGAAGAGCTACAATTCCAAAATTTATTCCAGATCTAAGTGAGAAAATGGATGAAATGAAGTTAGAGGAAATGCGACAATATTACTTTCAAGTAGAAGAAAATGAGAGAAGTGAGACACAAGTGCAAGGTCATAGTTTATCAATTGAAAGGCCATTGACTGCTTCATCTTCATCAGCTACAGACCTATATCCTATCCACATTGATTCTTCCTATTGGGAGAAAAGAAATTAG	2559	0.3814	MVTSIDLKLRVLSLKLAERDQIEYILCSLTGEGDGGAMRILDMLLTSNYFTGNLPATFARLTTLKHLRLGDNQFSGTLPNFIQSWTSLEILVMQGSGFSGPIPFGISFLNNLTDLRISDVKGPDSQFPQIENLKKLQTLVLRSCNLTGTVPKYLGNMTSLKALDLSFNKLTGQIPRTLGDLKDINLLYLTGNNFTGTLPNGIGKPDYTDLSYNNLNIENAEQLTCQQGRVNLFAASLKGNNLGTIPCLGNINCPKTWYSLRINCGGKLISNGSMTYDDDSKEAGSANYFRSESNWVLSNTGHFFDMGPPDYYNWSITTKLAMENGELYMDARVSALSLTYYGFCMGNGNYTVSLHFAEIMFTNDQTYSSLGRRVFDIYIQRKLVQEDFNIAKEAGGVVQLEIRLQWAGKGTTAIPFGSVHGPLISAISVNPNFTPPVENGGGIPVQSIVAIVVAGALIIITVFGIAWWKGCLGQKNSLERELKDLNIQMGFFTMRQIKVATNNFDISNKIGEGGFGPVYKGILSNDMIIAVKMLSSKSKQGNREFINEIGLISALQHPCLVKLYGCCVEGDQLLLVYEYMENNSLANALFGNGESCLRLDWPTRHKICVGIARGLAFLHEESRLKIVHRDIKATNVLLDKDLNPKISDFGLAKLDEEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGVVALEIITGKSNIMHRPKQEALHLLDWAHLLNEKGNLMELVDRRLGSNFNEDEVMMMIKVALLCTNATSNLRPTMSSVLSMLEGRATIPKFIPDLSEKMDEMKLEEMRQYYFQVEENERSETQVQGHSLSIERPLTASSSSATDLYPIHIDSSYWEKRN	852

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo4g03313	852	FunFam	Putative LRR receptor-like serine/threonine-protein kinase isoform A	54	121	-	-
	Pumo4g03313	852	Gene3D	Transferase(Phosphotransferase) domain 1	580	785	-	-
	Pumo4g03313	852	SUPERFAMILY	Protein kinase-like (PK-like)	487	786	IPR011009	-
	Pumo4g03313	852	FunFam	LRR receptor-like serine/threonine-protein kinase ERECTA	127	218	-	-
	Pumo4g03313	852	FunFam	Putative leucine-rich repeat receptor-like serine/threonine-protein kinase	257	432	-	-
	Pumo4g03313	852	Pfam	Leucine rich repeat	135	194	IPR001611	GO:0005515
	Pumo4g03313	852	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	626	638	IPR008271	GO:0004672\|GO:0006468
	Pumo4g03313	852	Pfam	Malectin domain	259	427	IPR021720	-
	Pumo4g03313	852	SUPERFAMILY	L domain-like	43	248	-	-
	Pumo4g03313	852	Gene3D	Ribonuclease Inhibitor	24	253	IPR032675	-
	Pumo4g03313	852	Gene3D	-	257	432	-	-
	Pumo4g03313	852	Pfam	Protein tyrosine and serine/threonine kinase	506	774	IPR001245	GO:0004672\|GO:0006468
	Pumo4g03313	852	Gene3D	Phosphorylase Kinase; domain 1	472	579	-	-
	Pumo4g03313	852	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED	43	810	-	-
	Pumo4g03313	852	ProSiteProfiles	Protein kinase domain profile.	504	785	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo4g03313	852	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	580	786	-	-
	Pumo4g03313	852	SMART	serkin_6	504	775	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo4g03313	852	CDD	STKc_IRAK	510	777	-	-
	Pumo4g03313	852	FunFam	probable LRR receptor-like serine/threonine-protein kinase At1g53430	473	579	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo4g03313	Pumo-Chr4	69819898	69835194	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo4g03313	35	804	Receptor kinase-like Gene Family	AT1G53420	54.994	0.0	843

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Pumo4g03313		PK_Tyr_Ser-Thr	6.9e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo4g03313	-		-	gmx:100786496	1217.22