Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03308 ATGGGGAAGTTCTCGATCATGTTGCACGATAATTGCAGGAGCCGCAAGGAACCATCATGGCCATTAAGAAAGTGTTTTCACCATGGTGGTCGAAGAGATGTAGCAATGGGGATTGCACAAGATCAATGGAATGTTGACTTCTCTAACCTCTTAATCGGGCACAAATTTTCTCAAGGTGCTCACAGTCAAATCTACCATGGTATATACAAGGAGGAACATGTTGCCATGAAATTTGTGAAGCTACGAGACAATATTGATGAAAAGGGAACTCTCACATCTCTTTTGGAGACACAATTTTTAAGAGAAGTCACACATCTAACTCGTCTCCACCATCAAAATGTTGTAAAGTTTGTAGCCGCATGCAAAGACACACATTTTTATATTATTCTCACAGAGTATTTGCAAAAGGGTTCTTTAAGGGAGTATTTGAACAAGTTAGAACACAAGCCAATTTCTCTAAAGAAGGTGATATCTTTTGCTTTGGATATTGCACGTGGAATGGAGTGTGTGCACGCACAAGGTATCGTTCATAGGGACCTTAAACCGGAGAATGTTCTTGTTGATGGGGAGTTTCACCTCAAAATTGCTGATTTTGGCATTTCTTGTGAGGCTTCTAAGCGTGACTCATTGAGGGGTACCTACCGTTGGATGGCACCAGAGATGATCAAAGGAAAACACTATGGGAGAAAGGTTGATGTGTACAGTTTTAGGCTTATTTTGTGGGAGCTTGTGAGTGGGACAGTGCCATTTGAGCACATGGGTCCAATCCAAGTTGTTATTGCGGTGGCAGATAGGAATTCAAGGCCCATTATTCCTTCACATTGTCCACATGTTTTGAGAGATTTGATTCAGCAATGTTGGGCCTTGAAACCACAGAAGAGGCCCGAGTTCTGCATGTTGTTAGGGTTTTGGAGCAGTTAG 921 0.4213 MGKFSIMLHDNCRSRKEPSWPLRKCFHHGGRRDVAMGIAQDQWNVDFSNLLIGHKFSQGAHSQIYHGIYKEEHVAMKFVKLRDNIDEKGTLTSLLETQFLREVTHLTRLHHQNVVKFVAACKDTHFYIILTEYLQKGSLREYLNKLEHKPISLKKVISFALDIARGMECVHAQGIVHRDLKPENVLVDGEFHLKIADFGISCEASKRDSLRGTYRWMAPEMIKGKHYGRKVDVYSFRLILWELVSGTVPFEHMGPIQVVIAVADRNSRPIIPSHCPHVLRDLIQQCWALKPQKRPEFCMLLGFWSS 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03308 306 Gene3D Transferase(Phosphotransferase) domain 1 136 306 - -
Pumo4g03308 306 SMART serkin_6 50 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g03308 306 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672|GO:0006468
Pumo4g03308 306 PIRSF ILK 27 303 - -
Pumo4g03308 306 CDD STKc_MAP3K-like 58 297 - -
Pumo4g03308 306 Gene3D Phosphorylase Kinase; domain 1 38 135 - -
Pumo4g03308 306 SUPERFAMILY Protein kinase-like (PK-like) 36 301 IPR011009 -
Pumo4g03308 306 PRINTS Tyrosine kinase catalytic domain signature 231 253 IPR001245 GO:0004672|GO:0006468
Pumo4g03308 306 PRINTS Tyrosine kinase catalytic domain signature 275 297 IPR001245 GO:0004672|GO:0006468
Pumo4g03308 306 PRINTS Tyrosine kinase catalytic domain signature 212 222 IPR001245 GO:0004672|GO:0006468
Pumo4g03308 306 PRINTS Tyrosine kinase catalytic domain signature 131 144 IPR001245 GO:0004672|GO:0006468
Pumo4g03308 306 PRINTS Tyrosine kinase catalytic domain signature 169 187 IPR001245 GO:0004672|GO:0006468
Pumo4g03308 306 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 43 298 - -
Pumo4g03308 306 Pfam Protein tyrosine and serine/threonine kinase 52 300 IPR001245 GO:0004672|GO:0006468
Pumo4g03308 306 ProSiteProfiles Protein kinase domain profile. 50 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03308 Pumo-Chr4 69784782 69785702 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03308 5 301 MAP Kinase Kinase Kinase AT5G58950 51.667 3.62e-107 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Pumo4g03308 PK_Tyr_Ser-Thr 9.9e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03308 - - gmx:100782673 489.574