Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03306 ATGAACATGACTTTCCCTCCACTCTTCAATCTTTGGTTTCTTGCCTTTTGTTTGATCTCTTCTTTGGCTAGGGGAGCTACTCTACCAGAAGATGAAGTGCAAGTTATGAAAGACATAGCTAAGACACTTGGGAAGAAGAATTGGGATTTCAGTGTGGATCCATGCAGTGGACAAAGTAATTGGACTTCATCTGTTCAAGTGAAGGGATTTGAAAATGCTGTCACCTGCAATTGCCTTTTGGACAATGCCACTATCTGCCATGTTGTTAGCATTGTTCTTAAGTCACAAAATCTTACGGGCACACTCCCAACTGAACTAGTGAGATTGCCTTACCTCCAAGAAATTGATCTCTCCCGCAACTACCTTAATGGTACCATCCCTCCACAATGGGGCTCCATGAATCTTGTCAACATTTCCATTCTTGGAAATCGGCTAACAGGTCCAATCCCAAAAGAATTAGGAAACATCACCACACTGAAAAGTTTGGTCTTGGAGTTCAATCAATTATCTGGAGCGCTTCCTCCAGAGCTTGGGAATCTCCCCCGACTTGAAAGACTGCTTCTTACATCCAACTATTTTTCCGGAAATTTACCTGCAACATTTGCCAGGCTCACTAGACTAAAGCAACTTCGACTTGGTGACAATCAATTCTCTGGAACTTTACCCAATTTCATGCAGAGTTGGACAAGTCTAGAAAGACTGGTGATGCAAGGGAGTGGTTTTAGTGGGCCAATTCCTTCTGGAATTTCATTTCTAAACAACCTTACTGACTTGAGAATTAGTGACTTGAAAGGACCAGATTCTCAATTTCCCCAACTTAAAAACTTGACAAATTTGCAAACACTAGTATTAAGGAGTTGTAATCTTATAGGAATGGCTCCTGAATATCTTGGAAATGTGACTACTTTACGATCATTAGACTTCAGTTTTAACAAATTAACTGGACCGATTCCGAGAACCTTGGGTAGCCTAAACGATATAAATTTACTATATTTAACTGGAAACCTTTTTACTGGACCACTGCCCAATTGGATAGATAGGCCAGACTACACGGATCTCTCATATAACAATTTGAACATTGAAAACCCAGAGCAATTGACATGTCAACAAGGAAGCGTGAACTTGTTTGCATCATCAATAAAGGGAAATAACTCGGGAATGATTCCATGTTTAGGGAACATTATCTGTCCTAAAACTTGGTACTCTCTTCATATAAATTGTGGTGGGAAATTAATTTCTAATGGAAACATGAAATATGATGATGATTCACAAGAAGCTGGACCAGCAAGATTTCGCCGAACTGGATCAAACTGGGTTTTTAGCAACACTGGTCATTTCTTCGATAGCAGTCGTTTAGACTACTATACCTGGTCTAATACAACTAAGCTTGCTATGGACAATGGTGAATTGTATATGGATGCACGTGTTTCTGCCCTTTCTCTCACATATTATGCATTTTGTATGGGAAATGGAAGCTACACAGTAAGTCTTCATTTTGCAGAAATTATGTTCACTGATGATCAAACATATAGCAGCCTCGGAAGACGTGTATTTGACATTTATATTCAGAGAAAGTTGGTGTTGAAGGATTTCAATATTGCAAAAGAAGCAGGAGGAGTTGGTAAGGCAATCATAAAAAAGTTCACTACAATTGTGAATAGCAGCACCTTAGAGATTCGTTTGCAATGGGCGGGTAAAGGGACAACTGGTATCCCATTTGGATCAGTTCATGGTCCTCTTATATCAGCTATATCTGTTGATCCTGACTTTACACCCCAAGAGGAAAAAAGAGATGGCATGCGTGTGCAGTTTATTGTTGCAATTGTAGTTACTGGAGCACTTGTTATCATCATAATATTTGGTATAGCTTGGTGGAGAGGATGTCTAGGACGAAAAGGTTCATTAGAAATAGAGCTAAGAGGTGTAGATTTGCAAACTGGCTTATTTAGCTTACGACAAATCAGAGCTGCAACTAAGAACTTTGATATTGCCTTCAAGATTGGAGAAGGAGGATTTGGTCCTGTTTACAAGGGTGTTCTCTCAGATGGCACGGTAATAGCAGTTAAACAACTTTCTTCTAAATCAAAGCAAGGGAATCGTGAGTTTATCAATGAGATTGGCATGATTTCTGCTTTGCAACACCCTTGTCTAGTTAAGCTCTATGGTTGTTGTATGGAGGGAGATCAATTGATGTTGATATATGAATACATGGAAAATAATAGTCTTGCTCGTGCTTTATTTGCACAAGAAAAATGTCAATTGAAGTTGGATTGGTCAACAAGGCAGAGGATTTGTGTTGGTATTGCTAGAGGTTTAGCTTACCTCCATGGAGAGTCAAGGTTGAAGATAGTTCACAGGGACATCAAGGCCACTAATGTGTTACTTGATAAAGATCTCAATCCAAAAATATCTGATTTTGGTTTGGCCAAGCTTGATGAAGAGGGCTATACACACATGACTACCAGAATAGCTGGCACCTATGGATACATGGCTCCTGAATACGCAATGCATGGTTATTTGACTGACAAAGCAGATGTTTATAGTTTTGGCATTGTTGCATTGGAAATTGTTAGTGGAAAGAGTAACTCCATGAACTGGCCAAAGGAAGGGTGTTTCTCCCTTGTTGATTGGGTGCATCTCTTGAAAGAACAAGGTGATCTAATCGACCAGCTGGTTGATGAGAGGTTGGGTAAAGATTTCAAAAAAGATGAAGTAATGGTCATGATCAATGTGGCTCTACTATGCACACAAGTTTCCCCAATGCATAGACCCACCATGGCTTCAGTGGTATGCATGCTTGAAGGCAAAACTGAAGTTCAAGAAGTGCTGTCGGACACAAACCAGGTATTGGATGGAAAGAAGTTAGAGATGATCCAACAATATTACCAACTAAGAGAAAAAAATAAGAACCATGAGACTGAAGAAGAAAGCATCTCAATGGGTGAAACTTCAGCATTCATGTCTGACACGGATCTATATTCTATCAACATGGATTCTTCTTACCAGGAGAAAAGTGATTAG 3021 0.3966 MNMTFPPLFNLWFLAFCLISSLARGATLPEDEVQVMKDIAKTLGKKNWDFSVDPCSGQSNWTSSVQVKGFENAVTCNCLLDNATICHVVSIVLKSQNLTGTLPTELVRLPYLQEIDLSRNYLNGTIPPQWGSMNLVNISILGNRLTGPIPKELGNITTLKSLVLEFNQLSGALPPELGNLPRLERLLLTSNYFSGNLPATFARLTRLKQLRLGDNQFSGTLPNFMQSWTSLERLVMQGSGFSGPIPSGISFLNNLTDLRISDLKGPDSQFPQLKNLTNLQTLVLRSCNLIGMAPEYLGNVTTLRSLDFSFNKLTGPIPRTLGSLNDINLLYLTGNLFTGPLPNWIDRPDYTDLSYNNLNIENPEQLTCQQGSVNLFASSIKGNNSGMIPCLGNIICPKTWYSLHINCGGKLISNGNMKYDDDSQEAGPARFRRTGSNWVFSNTGHFFDSSRLDYYTWSNTTKLAMDNGELYMDARVSALSLTYYAFCMGNGSYTVSLHFAEIMFTDDQTYSSLGRRVFDIYIQRKLVLKDFNIAKEAGGVGKAIIKKFTTIVNSSTLEIRLQWAGKGTTGIPFGSVHGPLISAISVDPDFTPQEEKRDGMRVQFIVAIVVTGALVIIIIFGIAWWRGCLGRKGSLEIELRGVDLQTGLFSLRQIRAATKNFDIAFKIGEGGFGPVYKGVLSDGTVIAVKQLSSKSKQGNREFINEIGMISALQHPCLVKLYGCCMEGDQLMLIYEYMENNSLARALFAQEKCQLKLDWSTRQRICVGIARGLAYLHGESRLKIVHRDIKATNVLLDKDLNPKISDFGLAKLDEEGYTHMTTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIVSGKSNSMNWPKEGCFSLVDWVHLLKEQGDLIDQLVDERLGKDFKKDEVMVMINVALLCTQVSPMHRPTMASVVCMLEGKTEVQEVLSDTNQVLDGKKLEMIQQYYQLREKNKNHETEEESISMGETSAFMSDTDLYSINMDSSYQEKSD 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03306 1006 Gene3D - 400 588 - -
Pumo4g03306 1006 SUPERFAMILY Protein kinase-like (PK-like) 646 934 IPR011009 -
Pumo4g03306 1006 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 630 736 - -
Pumo4g03306 1006 SUPERFAMILY L domain-like 76 358 - -
Pumo4g03306 1006 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 197 264 - -
Pumo4g03306 1006 SMART serkin_6 661 933 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g03306 1006 CDD STKc_IRAK 667 935 - -
Pumo4g03306 1006 Gene3D Ribonuclease Inhibitor 36 195 IPR032675 -
Pumo4g03306 1006 Gene3D Ribonuclease Inhibitor 266 388 IPR032675 -
Pumo4g03306 1006 Gene3D Ribonuclease Inhibitor 196 265 IPR032675 -
Pumo4g03306 1006 FunFam Putative LRR receptor-like serine/threonine-protein kinase 737 945 - -
Pumo4g03306 1006 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 400 589 - -
Pumo4g03306 1006 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase isoform A 32 191 - -
Pumo4g03306 1006 ProSitePatterns Serine/Threonine protein kinases active-site signature. 783 795 IPR008271 GO:0004672|GO:0006468
Pumo4g03306 1006 Pfam Malectin domain 402 584 IPR021720 -
Pumo4g03306 1006 Gene3D Transferase(Phosphotransferase) domain 1 737 950 - -
Pumo4g03306 1006 ProSiteProfiles Protein kinase domain profile. 661 943 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g03306 1006 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 16 959 - -
Pumo4g03306 1006 Gene3D Phosphorylase Kinase; domain 1 633 736 - -
Pumo4g03306 1006 Pfam Protein tyrosine and serine/threonine kinase 666 931 IPR001245 GO:0004672|GO:0006468
Pumo4g03306 1006 Pfam Leucine rich repeat 277 336 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03306 Pumo-Chr4 69718026 69730213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03306 19 964 Receptor kinase-like Gene Family AT1G53420 54.071 0.0 1007
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pumo4g03306 PK_Tyr_Ser-Thr 1.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03306 - - gmx:100786496 1863.58