Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03297 ATGAAGATTCAGTGTAACGTGTGTGAGGCTGCGGAGGCCAAGGTTCTGTGTTGTGCTGATGAGGCTGCGCTGTGTTGGGAGTGTGATGAGAAGGTTCATGCGGCTAACAAGCTTGCCAGCAAGCACCAGAGAGTGCCTCTCTCTACCTCTTCCTCTCATATGCCCAAATGTGACATTTGTCAGGAAGCATTAGGCTATTTTTTCTGTCTAGAAGATCGGGCTCTGCTCTGCAGAAAATGTGATGTGGCAATACACACTGCAAATGCTTATGTCTCTGGTCATCAGAGGTTTCTTCTCACTGGTGTAAGAGTAGGCCTTGAAGCTACAGACCCTGGTGCTTCCTCAACTTCTTTGAAGTCAGATTCCGGGGAGAAAATTTCAGATACAAAGTCTTCTTCTGTCTCTAAAAAGGTTTCCTCAGCGCCCCAGCCATCAGATTACAATGAAGTGCTACCCATCGAAGTTGGAGGAGTTGGGGAGTTTCCACCAGCTAAGGTGTCTTTTGGTGGTGGGTCTACATCTGGAAATATCTCACAGTGGACGATTGATGAATTTATTGGCTTAAATGAGTTCAATCAGAATTATGATTACATGGAAGGATCATCAAGGGCTGACGGTGGTAAGCTTGGGGATTCTGATTTTCCTGTTTTAAGATCCGGTGAAGATGAAATGGAGGAGGACGATGACTATTTGGAACGCGTTCCAGATTCGTTGTGGACAGTTCCTCAGATCCCTTCCCCACCTACTGCTTCTGGGTTATGCTGGCCAAAAGACCCTCAATATTCATCTGATAGTCTTCTGTTTGTTCCTGACATAAGCTTCTCTCACATGCAACAATCTCAGATTAGTAGTATTTTTTCGAGACGCTGGAGGCAGCTTTAA 882 0.4558 MKIQCNVCEAAEAKVLCCADEAALCWECDEKVHAANKLASKHQRVPLSTSSSHMPKCDICQEALGYFFCLEDRALLCRKCDVAIHTANAYVSGHQRFLLTGVRVGLEATDPGASSTSLKSDSGEKISDTKSSSVSKKVSSAPQPSDYNEVLPIEVGGVGEFPPAKVSFGGGSTSGNISQWTIDEFIGLNEFNQNYDYMEGSSRADGGKLGDSDFPVLRSGEDEMEEDDDYLERVPDSLWTVPQIPSPPTASGLCWPKDPQYSSDSLLFVPDISFSHMQQSQISSIFSRRWRQL 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03297 293 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 275 - -
Pumo4g03297 293 SMART bboxneu5 4 47 IPR000315 GO:0008270
Pumo4g03297 293 SMART bboxneu5 52 99 IPR000315 GO:0008270
Pumo4g03297 293 CDD Bbox1_BBX-like 5 47 - -
Pumo4g03297 293 MobiDBLite consensus disorder prediction 110 149 - -
Pumo4g03297 293 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Pumo4g03297 293 Gene3D Classic Zinc Finger 1 92 - -
Pumo4g03297 293 MobiDBLite consensus disorder prediction 110 146 - -
Pumo4g03297 293 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Pumo4g03297 293 FunFam B-box zinc finger protein 22 1 93 - -
Pumo4g03297 293 CDD Bbox1_BBX-like 56 99 - -
Pumo4g03297 293 Pfam B-box zinc finger 54 95 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03297 Pumo-Chr4 69330287 69333966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03297 1 275 C2C2-CO-like Transcription Factor Family AT1G78600 50.804 4.57e-92 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Pumo4g03297 zf-B_box 5.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03297 - - gmx:100790959 538.11