Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03294 ATGGTTGGGTTCCAGAGTGACCATAAGCCTGGGAACAAATACAATGGTAATTCTAATAGTTTTCCGGGTACGGATCGTCATGGACGACTTATTAGAGGAAGAGAGCAAAGAAAAAGCAGCAGGGCATCTCTTTTGAATGAGTCTCTTGATAGTAATAATAATATTAATGATAATTTTGAGCATGACCTGCGCTTAAGAGAAGATAATAACTCTGCTGCTCCCTTAGTTGAACCATACCTGGAAGGAGTGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGCAGGGCCAAAGGGAAGATGGGAGACCTTCCAGACAACGGCTTTTGGTGGTGGCCAATAGGCTGCCAGTCTATGCAATTAGGAAAGGCGAGGATTCGTGGTCTTTGGAGTTAAGTTCTGGTGGCCTGGTGAGCGCTCTCTTAGGTGTGAAGGACTTTGAGGCGAGGTGGATAGGTTGGGCTGGTGTCAATGTGCCAGATGAGATTGGACAAAAGGCACTTACAAAAGCTTTGGCTGAAAAGAGGTGTATCCCAGTATTTCTTGATGAAGAGATTGTTCATCAATATTACAATGGCTATTGCAACAACATTTTGTGGCCCCTTTTTCATTACCTTGGACTTCCACAAGAAGACCGCCTTGCTACCACACGGAGTTTCCAATCTCAGTTTGAAGCATATCAGAAAGCAAATCAAATGTTTGCTGATGTTGTAAACAAACACTATGAAGAGGGTGATGTTGTTTGGTGTCATGATTACCATCTTATGTTTCTTCCACAATGCTTAAAGAATTATAACCCCAAAATGAAAGTTGGCTGGTTTCTGCATACCCCATTTCCATCTTCTGAAATTCACAAGACATTGCCATCTCGCTCAGAGCTCTTGCATGCTGTTCTTGCAGCTGATTTGGTTGGTTTTCACACCTACGATTATGCACGACATTTTGTTAGTGCATGTACACGTATTCTTGGACTTGAGGGCACGCCTGAAGGGGTTGAGAATCAAGGGAAGCTGACTCGAGTTGCAGCATTTCCAATAGGTATAGACTCAGAACGATTCATACGTGCACTTGACCTTCCTCAAGTCAAGGATCACATAAAAGAATTACAAGAGAGATTTAAAGGAAGAAAGGTAATGTTAGGTGTTGATCGCCTTGATATGATTAAAGGAATCCCTCAAAAAATTATAGCATTTGAAAAATTTTTGGAAGAGAATCATGATTGGCGTGATAAAGTTGTTCTGCTTCAAATTGCCGTGCCAACAAGAACAGATGTTCCTGAGTATCAAAAGCTTACAAGCCAGGTCCATGAAATTGTTGGTCGCATCAATGGCAGATTCGGAACACTGACTACTGTTCCCATACATCACCTGGATCGCTCTCTTGATTTTCATGAACTATGTGCTTTGTACGCTGTTACGGATGTAGCACTTGTCACGTCTTTGAGGGATGGAATGAATCTTGTAAGTTACGAATTTGTGGCCTGCCAAGATAAAAAGAAAGGGGTTCTCATTCTTAGCGAATTTGCTGGTGCTGCACAGTCACTTGGTGCTGGGGCGATTCTGGTCAACCCTTGGAACATCACAGAAGTTGCTGCTGCAATTGCCAAGGCTCTGAAAATGCCATCGGCAGAACGAGAGAAGAGACATGGGTATAACTTTAAACATGTAACAACTCACACTGCTCAAGAATGGGCAGAAACTTTTGTAAGTGAACTAAATGATACTGTTGTTGAGGCACACATAAGGACAAAACAAGTTCCACCACGGCTCCCAACAGAGACTGCAGTTGAACGTTATTTGCAGTCAAATAATCGGTTGCTTATTTTGGGTTTCAATGGAACTCTAACTGCACCAGTTGAGAGAAAAGGTGACCAGTATGAAGAAATGAAACTCACAGTGCATCCAGAACTGAAACAACCCTTGGCAGAACTTTGCAGTGACCCAAAGACCACAGTTGTTGTGCTTAGTGGAAGTGGTAGAACAGTTCTAGATGAAAACTTTAAAGAATATGACATCTGGCTGGCAGCAGAGAATGGGATGTTTTTACACCCTTCAAAGGGAGAATGGATGACAACAATGCCAGAGCAACTGAATATGGAATGGGTTGATAGTATGAAGCATGTTTTTGAGTACTTCATGGAAAGAACACCTCGATCATATTTTGAAGAAAGGGAAGCTTCACTTGTATGGAGTTACAGACTTGCAGATGTTGAGTTTGGAAGACTGCAAGCAAGGGAAATGCTGCAGCATCTCTGGACAGGTCCAATTTCTAATGCATCTGTTGAAGTTGTTCAAGGGAGCCGATCTGTTGAGGTGCGAGCTGCTAATTTTACAAAGGGAGCAGCTATTGACCGCATTCTAGGTGAGATAGTCCACAGTAAATCCATGACAACGCCAATTGATTACGTTCTGTGTATAGGACATTTTATGACAAAGGATGAAGATATATACGCGTTTTTTGATCCAGAGCTACCTTCTATTGGTATGGGTCTTCTTCCACGAAGTAAGGTAACAGAAGGAGTTAAGTACCCTGTTGAGAGGATATCGTCATTGAAGAACTCAGCTAGTAAAAATGGAACAGCAAAATCATCCCAAAATAAGGCACAACGGCCTGTGGAGAAGAAAACAAATAATCACGTGTGCCGTGCGCCACGTCGGCCAGTTCCTGAAAAGATCTCTTGGAATGTCCTTGATCTCAAGAAGGAGAATTACTTCTCGTGTGCCGTTGGACGAACACAAACGAATGCTCGGTATACGCTTGGATCACCAGATGAAGTTGTTGCATTTCTGAAGGAACTAGCCAGGAACAGAACCAGAAAAAATTGTTAG 2826 0.4285 MVGFQSDHKPGNKYNGNSNSFPGTDRHGRLIRGREQRKSSRASLLNESLDSNNNINDNFEHDLRLREDNNSAAPLVEPYLEGVAAAAAAAAAAAQGQREDGRPSRQRLLVVANRLPVYAIRKGEDSWSLELSSGGLVSALLGVKDFEARWIGWAGVNVPDEIGQKALTKALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFEAYQKANQMFADVVNKHYEEGDVVWCHDYHLMFLPQCLKNYNPKMKVGWFLHTPFPSSEIHKTLPSRSELLHAVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVENQGKLTRVAAFPIGIDSERFIRALDLPQVKDHIKELQERFKGRKVMLGVDRLDMIKGIPQKIIAFEKFLEENHDWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTTVPIHHLDRSLDFHELCALYAVTDVALVTSLRDGMNLVSYEFVACQDKKKGVLILSEFAGAAQSLGAGAILVNPWNITEVAAAIAKALKMPSAEREKRHGYNFKHVTTHTAQEWAETFVSELNDTVVEAHIRTKQVPPRLPTETAVERYLQSNNRLLILGFNGTLTAPVERKGDQYEEMKLTVHPELKQPLAELCSDPKTTVVVLSGSGRTVLDENFKEYDIWLAAENGMFLHPSKGEWMTTMPEQLNMEWVDSMKHVFEYFMERTPRSYFEEREASLVWSYRLADVEFGRLQAREMLQHLWTGPISNASVEVVQGSRSVEVRAANFTKGAAIDRILGEIVHSKSMTTPIDYVLCIGHFMTKDEDIYAFFDPELPSIGMGLLPRSKVTEGVKYPVERISSLKNSASKNGTAKSSQNKAQRPVEKKTNNHVCRAPRRPVPEKISWNVLDLKKENYFSCAVGRTQTNARYTLGSPDEVVAFLKELARNRTRKNC 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03294 941 CDD HAD_TPP 605 822 - -
Pumo4g03294 941 NCBIfam alpha,alpha-trehalose-phosphate synthase (UDP-forming) 107 572 IPR012766 GO:0003825|GO:0005992
Pumo4g03294 941 CDD GT20_TPS 107 572 IPR001830 GO:0003824|GO:0005992
Pumo4g03294 941 Gene3D Glycogen Phosphorylase B; 354 556 - -
Pumo4g03294 941 Gene3D - 694 774 - -
Pumo4g03294 941 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 99 933 IPR001830 GO:0003824|GO:0005992
Pumo4g03294 941 MobiDBLite consensus disorder prediction 10 24 - -
Pumo4g03294 941 NCBIfam trehalose-phosphatase 603 833 IPR003337 GO:0003824|GO:0005992
Pumo4g03294 941 MobiDBLite consensus disorder prediction 851 866 - -
Pumo4g03294 941 MobiDBLite consensus disorder prediction 1 51 - -
Pumo4g03294 941 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 106 575 - -
Pumo4g03294 941 Pfam Glycosyltransferase family 20 107 572 IPR001830 GO:0003824|GO:0005992
Pumo4g03294 941 Pfam Trehalose-phosphatase 626 827 IPR003337 GO:0003824|GO:0005992
Pumo4g03294 941 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 694 774 - -
Pumo4g03294 941 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 99 353 - -
Pumo4g03294 941 Gene3D Glycogen Phosphorylase B; 99 353 - -
Pumo4g03294 941 MobiDBLite consensus disorder prediction 27 41 - -
Pumo4g03294 941 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 354 556 - -
Pumo4g03294 941 SUPERFAMILY HAD-like 604 933 IPR036412 -
Pumo4g03294 941 Gene3D - 607 818 IPR023214 -
Pumo4g03294 941 MobiDBLite consensus disorder prediction 851 877 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03294 Pumo-Chr4 69235203 69249728 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03294 10 933 Trehalose Biosynthesis Gene Families AT1G78580 75.053 0.0 1427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03294 K16055 - gmx:100789554 1640.94