Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03261 ATGCTACAACTCAAGAGTATCTCTGAGACCACTAAAGCTGAAGTTAACTCAAGAACATATAGGAGTGAGTACAGTAGAACAAGTATGAGACAAGCTGGTGCATATTCAGGGTTACTGTGTGGTGGGGTATCAGGAAGGACAGGGCCCCACTCACTGCCCTTGGCAAGGATCAAGAAGATCATGAAGAATTCTGGGGAGGATGTTAAGATGATATCTGGGGAGGCTCCCATTATTTTCTCCAAGGCTTGTGAGCTCTTCATTGAGGAACTTACTAGAAGGTCCTGGATCATGGCCATCCAAGGCAAAAGGAGAACTTTGCACAAAGAGGACTTGGCCTCTGCTGTTATAGCCACTGATATCTTTGACTTTTTGATCACTTTGGTTTCCAATTCTGACAGCCATGCAGTTGGTGGTGCCACCACTGGCATGGAGGTGGAAACTATAGATTACTCTTAA 456 0.4518 MLQLKSISETTKAEVNSRTYRSEYSRTSMRQAGAYSGLLCGGVSGRTGPHSLPLARIKKIMKNSGEDVKMISGEAPIIFSKACELFIEELTRRSWIMAIQGKRRTLHKEDLASAVIATDIFDFLITLVSNSDSHAVGGATTGMEVETIDYS 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03261 151 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 51 115 IPR003958 -
Pumo4g03261 151 Gene3D Histone, subunit A 6 130 IPR009072 GO:0046982
Pumo4g03261 151 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 31 132 - -
Pumo4g03261 151 FunFam Nuclear transcription factor Y subunit C-3 43 129 - -
Pumo4g03261 151 SUPERFAMILY Histone-fold 43 124 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03261 Pumo-Chr4 67467634 67468089 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03261 50 132 CCAAT-HAP5 Transcription Factor Family AT1G54830 63.855 4.16e-33 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Pumo4g03261 CBFD_NFYB_HMF 2.4e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03261 - - gmx:100820378 234.572