Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03258 ATGAAAAGTTACAACATGAAGAACCTTATTATGTCTTTTATGAGAATTATTTTCCTTTGTTATCATGTACTTGTCTATCTTTCTGAAAATTCCTTGGCACTTGACTCCATTTCTCAAGACCTGTCCCTAAGTGATGATGGTAAGAACACCACCTTGGTTTCCAAAGATGGAAACTTTGAACTTGGATTTTTCACTCCAGGAAACTCCCAGAAACGTTACCTTGGGATTTGGTACAGGAAAATCCCTGTTCAAACTGTGGTTTGGGTTGCAAACAGGCTCAATCCAATCAATGATTCATCTGGCATCTTAAGAATGAACACCAGCACTGGGACTCTTGTCCTCACAGAGAATGGCACTGTTGTTTGGTCTACAACCTCTCTGAGAAAGCCAGAGAGTCCAGTGGCCATTCTCTTAGATTCTGGCAATCTTGTGGTAAGAGATGAGAAAGATGCAAACACTGAGGACTACTTGTGGCAGAGTTTTGACTACCCAACTGACACTTTCTTACCTGAAATGAAGTTTGGTTGGGACTTGAGAACTGGTCTTAATAGGAAGCTAATAGCTTGGAAGAGTCCTGATGATCCATCTCCTAGTGACTTCTCTTTTGGTATGGTGCTCAACAACTATCCTGAAGCATATATGATGAAGGGTGATCAAAAGTTCTACCGAAGTGGACCATGGAATGGCTTGCATTCAAGTGGTTCACCACAAGTTAAGGCCAACCCCATTTATGACTTCAAGTTTGTTTCCAACAAGGATGAACTTTACTACACATACAGCCTTAAGAACTCGTCTATGATCTCAAGGTTGGTGCTGAATGCAACAAACTATGTTCGCAGGCGTTATGTGTGGATTGAATCAAAGCAAAAATGGGAGGTCTACACTTCAGTGCCACTGGACTTATGTGACAGTTATTCCCTTTGTGGGGCTAATGCAAATTGTGTTATTTCAGATTCACCAGTGTGCCAATGTTTGGAAGGGTTCAAGCCTAAGTCACCTGAAGCATGGAGATCAATGGATTGGTCTCATGGATGCGTCCGCAATAAGGAATTAAGCTGTGAGAACAAGCACAATGATGGATTTATCAAATTGACTGAGCTGAAAACGCCTGACACTACACATAGTTGGCTGGATCAGACAATTGGGTTAGAGGAATGCAGAGCCAAGTGCTTGGATAACTGTTCTTGTATGGCTTATGCGAATTCGGATATCAGTGGACAAGGAAGCGGTTGTGCTATGTGGTTTGGTGATCTAATTGATATTAGACAGTTTGCAGCTGGAGGCCAGGATGTATATGTTCGAATTGATGCTTCAGAATTAGAACACGCCAATGAGGGCCACAAGAAGGGGAGAGTCCTAGTGGCGGTAACAGTTTCTTTGGCCGTGGCTGCAGTTGCTGGAATACTAATAATACTTGGTTGGTGTTACAGAAAGAAATCACGTTGCAGTGTGAAAGATAGATCAAACTTCAGTATCAAATCAAATCGAAACAGTGGAATGCAAGTGGATGATATGGACCTACCAGTTTTTGACTTGTCAACAATAGCTAAGGCCACTAGCAACTTTACAGTCAAGAACAAAATTGGAGAAGGTGGTTTTGGACCTGTATACAGGGGAACTCTAGCAGATGGGCTGGAAATTGCGGTGAAGAGGCTTTCAGCAAGCTCAGGACAAGGATTGACAGAATTTAAGAATGAAGTAAAATTGATTGCAAAACTTCAACACCGTAATCTTGTAAAGCTTCTTGGATGTTGCCTTGAAGAAGAGGAGAAAATGTTGGTCTATGAATACATGCTTAATGGTAGCCTGGACTCATTTATTTTTGATGAGCAAAGAAGTGGATCACTAGACTGGTCAAAGCGCTTCAACATTATATCTGGAATTGCCAAGGGCCTTCTCTATCTTCATCAGGATTCTAGACTAAGGATTATTCACAGAGATCTCAAAGCAAGCAATGTTTTACTTGATTGTGAGTTGAACCCCAAAATTTCAGATTTTGGCATGGCTAGAATTTTTGGTGTAGATCAGCAAGAAGGAAACACAAAGAGAATAGTTGGGACTTAG 2064 0.4138 MKSYNMKNLIMSFMRIIFLCYHVLVYLSENSLALDSISQDLSLSDDGKNTTLVSKDGNFELGFFTPGNSQKRYLGIWYRKIPVQTVVWVANRLNPINDSSGILRMNTSTGTLVLTENGTVVWSTTSLRKPESPVAILLDSGNLVVRDEKDANTEDYLWQSFDYPTDTFLPEMKFGWDLRTGLNRKLIAWKSPDDPSPSDFSFGMVLNNYPEAYMMKGDQKFYRSGPWNGLHSSGSPQVKANPIYDFKFVSNKDELYYTYSLKNSSMISRLVLNATNYVRRRYVWIESKQKWEVYTSVPLDLCDSYSLCGANANCVISDSPVCQCLEGFKPKSPEAWRSMDWSHGCVRNKELSCENKHNDGFIKLTELKTPDTTHSWLDQTIGLEECRAKCLDNCSCMAYANSDISGQGSGCAMWFGDLIDIRQFAAGGQDVYVRIDASELEHANEGHKKGRVLVAVTVSLAVAAVAGILIILGWCYRKKSRCSVKDRSNFSIKSNRNSGMQVDDMDLPVFDLSTIAKATSNFTVKNKIGEGGFGPVYRGTLADGLEIAVKRLSASSGQGLTEFKNEVKLIAKLQHRNLVKLLGCCLEEEEKMLVYEYMLNGSLDSFIFDEQRSGSLDWSKRFNIISGIAKGLLYLHQDSRLRIIHRDLKASNVLLDCELNPKISDFGMARIFGVDQQEGNTKRIVGT 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03258 687 SUPERFAMILY alpha-D-mannose-specific plant lectins 86 195 IPR036426 -
Pumo4g03258 687 Pfam D-mannose binding lectin 85 190 IPR001480 -
Pumo4g03258 687 CDD PAN_AP_plant 351 435 - -
Pumo4g03258 687 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 352 435 - -
Pumo4g03258 687 CDD B_lectin 47 164 IPR001480 -
Pumo4g03258 687 Pfam S-locus glycoprotein domain 222 332 IPR000858 GO:0048544
Pumo4g03258 687 Gene3D Phosphorylase Kinase; domain 1 481 597 - -
Pumo4g03258 687 Gene3D Transferase(Phosphotransferase) domain 1 598 687 - -
Pumo4g03258 687 SUPERFAMILY Protein kinase-like (PK-like) 502 687 IPR011009 -
Pumo4g03258 687 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 598 687 - -
Pumo4g03258 687 Pfam Protein tyrosine and serine/threonine kinase 523 677 IPR001245 GO:0004672|GO:0006468
Pumo4g03258 687 Pfam PAN-like domain 353 421 IPR003609 -
Pumo4g03258 687 Gene3D - 33 161 IPR036426 -
Pumo4g03258 687 ProSiteProfiles PAN/Apple domain profile. 353 437 IPR003609 -
Pumo4g03258 687 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 486 597 - -
Pumo4g03258 687 ProSiteProfiles EGF-like domain profile. 298 334 IPR000742 -
Pumo4g03258 687 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 25 677 - -
Pumo4g03258 687 SMART blect_4 43 164 IPR001480 -
Pumo4g03258 687 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 30 161 - -
Pumo4g03258 687 SMART serkin_6 522 684 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g03258 687 ProSiteProfiles Bulb-type lectin domain profile. 34 158 IPR001480 -
Pumo4g03258 687 ProSiteProfiles Protein kinase domain profile. 522 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g03258 687 SMART ntp_6 356 435 IPR003609 -
Pumo4g03258 687 ProSitePatterns Serine/Threonine protein kinases active-site signature. 643 655 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03258 Pumo-Chr4 67390310 67394925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03258 452 687 Receptor kinase-like Gene Family AT4G23190 54.622 1.02e-80 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pumo4g03258 PK_Tyr_Ser-Thr 5e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03258 - - gmx:100778155 1262.28