Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03256 ATGGCAGATGATCAATTTCAGGCAAGTGGGAACTGGTGGGACACAGCAAGGAACGTGAGGTATGAGAGCGGGGCATCACAGTCATCTTCCTCAGCCATCACCAACATAGGCAACTTTGGTTGGCAAGCTTCAGATATGGCAGACATGAAGCCAAGGTCTTCATCCATGGATTCTTCTTCTATGGTTTTCCATGACACACAGAATAAGCTTCAACCACCCCCAGATTCTGCCACTTCCACTGACCCCAACTTGCATATGATGGGCCTAGGCCTCTCATCCCAAGCCATGGATTGGAATCAACAAGCATCTTTGTTACGAGGGGAGAAGGGTACAGAGAACAGTTTCAGATCGATGCTGCAAGAGAATTTGGGCTCATCAAGGACCAATTTTCAGCAAGAAACTGGGATGGGGTTGTCTCAACAACAAGTTCAATGGAGGTCAGAGAAGATGTTCTCTGCAGAGTCTTCAACCAACGAGTTCAAGCAAGTGAATAGGGGTGGTTTCTCTTTGGATCAAAGCCAGTTTAGTCCTCAATACAGCTCTGGGGACAGCACAGTGACAAGCCAAGGGTTACCTTCTTCTAACTTTCACATGGATTCCTCAGCCTTATATGGGACCCCTTCAATCTTGCAAGGACTATTGGGACCTGATCACAATAACCAACCCCAACAACAACAACCTTCTTCCATGAGTTTTCCATACCCAACAAGCTATGGCTTAAACTCTAATGAGTTGGTCCCTTCTTGGGCCAAAGTTCCTCAATTCTTGAGAGCCTCACCTCCAAAACAACCACCCAATAACCAGTTGCATTTCACTAACAACGCAACCTTTTGGAACGCTTCAGATGCTGCAAACATCAAAGATGTTAGGCCCAGCTTCTTCCCCTCATTGCAACCCCCCTTCAATACGCCAAATTTTGAAGTACAGTCAAAGAATATATCTGAAGTTAGGGATTCGGGTACTGTGGTAAAGAAAAGTGGGAATGAGCCAGCACCCAAAAGGACCCGTAACGAAACACCATCTCCTATGCCAGCTTTTAAGGTGAGAAAAGAGAAGATGGGGGACAGAATCACTGCACTCCAACAATTGGTGTCGCCTTTCGGAAAGACTGATACAGCCTCAGTGCTCTCTGAAGCCATTGAATACATCAAATTCCTCCACGAACAGGTCACTGCTTTAAGTACCCCGTATATGAAAAGTGGAGCTCCAATACAGATTCAACAGAATTCTGGTAAACCTAAGGAAGCAGAGGGTCCAAAGCAGGATCTTAGAAGCCGAGGGCTATGCTTGGTGCCTGTTTCGAGTACATTTCCAGTGACTCATGAAACCACAGTTGATTTTTGGACACCAACATTCGGAGGAACTTCCAGATAA 1374 0.46 MADDQFQASGNWWDTARNVRYESGASQSSSSAITNIGNFGWQASDMADMKPRSSSMDSSSMVFHDTQNKLQPPPDSATSTDPNLHMMGLGLSSQAMDWNQQASLLRGEKGTENSFRSMLQENLGSSRTNFQQETGMGLSQQQVQWRSEKMFSAESSTNEFKQVNRGGFSLDQSQFSPQYSSGDSTVTSQGLPSSNFHMDSSALYGTPSILQGLLGPDHNNQPQQQQPSSMSFPYPTSYGLNSNELVPSWAKVPQFLRASPPKQPPNNQLHFTNNATFWNASDAANIKDVRPSFFPSLQPPFNTPNFEVQSKNISEVRDSGTVVKKSGNEPAPKRTRNETPSPMPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVTALSTPYMKSGAPIQIQQNSGKPKEAEGPKQDLRSRGLCLVPVSSTFPVTHETTVDFWTPTFGGTSR 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03256 457 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 347 402 IPR036638 GO:0046983
Pumo4g03256 457 MobiDBLite consensus disorder prediction 207 236 - -
Pumo4g03256 457 SMART finulus 348 392 IPR011598 GO:0046983
Pumo4g03256 457 MobiDBLite consensus disorder prediction 48 81 - -
Pumo4g03256 457 MobiDBLite consensus disorder prediction 47 81 - -
Pumo4g03256 457 CDD bHLH_AtbHLH_like 343 394 IPR045239 -
Pumo4g03256 457 MobiDBLite consensus disorder prediction 404 423 - -
Pumo4g03256 457 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 126 438 - -
Pumo4g03256 457 MobiDBLite consensus disorder prediction 169 193 - -
Pumo4g03256 457 FunFam Transcription factor bHLH123 family 347 409 - -
Pumo4g03256 457 Gene3D - 347 405 IPR036638 GO:0046983
Pumo4g03256 457 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 337 386 IPR011598 GO:0046983
Pumo4g03256 457 MobiDBLite consensus disorder prediction 318 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03256 Pumo-Chr4 67356143 67361265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03256 106 457 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 47.727 4.07e-79 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03256 - - gmx:100778697 796.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03256 4 67356143 67361265 Pumo4g03256 4 67356143 67361265 ECH