Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03253 ATGGGGAAGAAGGCGAAGAAAGCTATGAAGAAGAATTTGAAAAGGGCTTCCTTTAAGAAGCCATCTGAGGGTGCTGATTTTTTGCCCTTGGAAGGTGGTCCTGCTCGCAAGCTCGCCCAACAGAAGCCGCCGGAGAATACCGCCACGGTTTTGTATGTGGGTCGGATTCCACATGGATTCTATGAGAAGGAGATGGAAGGTTATTTTGGGCAATTTGGAACCATCAAGAGGTTGAGAATTGCAAGAAATAAAAAGTCTGGAAAATCAAGACATTTTGGGTTCATAGAATTTGAATCTCCTGAGGTAGCAAAAATTGTAGCTGATACTATGCACAATTATCTCCTTTTTGAACACCTTCTCCAAGTTTATGTGATACCTCCAGAGCATGTTCATCCAAGATTATGGAGAGGATTCAATTACCGTTACAAGCCAGTGGATTCAGTCCAAATTGAACGGAAGCATCATGACAAGGATAGAACATTGGAAGAGCACAAGAAATTGGTGGAGAAGATTCAGAAACAAGACCAAAAACGACGTAAAAGGATAGAGGCTGCTGGCATTGATTATGAATGCCCTGAGATTGTGAGCCTTTTGCTTTTATCAATCTGTTTTTGCTCATTTGTTTTCATAAAATTAGAAAAGTCTGCATCTTGA 654 0.4098 MGKKAKKAMKKNLKRASFKKPSEGADFLPLEGGPARKLAQQKPPENTATVLYVGRIPHGFYEKEMEGYFGQFGTIKRLRIARNKKSGKSRHFGFIEFESPEVAKIVADTMHNYLLFEHLLQVYVIPPEHVHPRLWRGFNYRYKPVDSVQIERKHHDKDRTLEEHKKLVEKIQKQDQKRRKRIEAAGIDYECPEIVSLLLLSICFCSFVFIKLEKSAS 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03253 217 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 49 127 IPR000504 GO:0003723
Pumo4g03253 217 MobiDBLite consensus disorder prediction 1 15 - -
Pumo4g03253 217 Gene3D - 4 124 IPR012677 -
Pumo4g03253 217 SUPERFAMILY RNA-binding domain, RBD 34 138 IPR035979 GO:0003676
Pumo4g03253 217 SMART rrm1_1 50 123 IPR000504 GO:0003723
Pumo4g03253 217 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 51 118 IPR000504 GO:0003723
Pumo4g03253 217 Coils Coil 157 177 - -
Pumo4g03253 217 MobiDBLite consensus disorder prediction 1 41 - -
Pumo4g03253 217 CDD RRM_NIFK_like 50 122 - -
Pumo4g03253 217 PANTHER MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN 6 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03253 Pumo-Chr4 67264280 67266777 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03253 49 122 Eukaryotic Initiation Factors Gene Family AT1G71770 35.135 1.47e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03253 K14838 - gmx:100778780 357.451