Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03243 ATGAAAGAGGAGTCAACTGGACTTATCATTGGGATTTCTATAGGTGTGGTGATTGGAGTTGGTTTGGCAATTTCTGCATTGTTCTGTCTTAGATATCACCGGAAGCGGTCGCAGATAGGCAATAGCAGTTCCCGGAGGGCAGCTACCATACCAATCCGCGAAAATGGTGCTGATTCTTGCACAATTCTATCAGACTCTACCTTAGGTCCAGAATCACCTGTAAGGTCTGGACGAAATGGCATGTCGTTCTGGCTTGATGGCTTCAAGAAGAGTAGTAACATGGTGTCAGCATCTGGAATACCAGAATATTCATACAAGGATTTGCAAAAGGCAACATATAATTTTACAACACTCATAGGACAAGGTGCATTTGGTCCTGTATATAAAGCTCAGATGTCTACTGGCGAGACTGTTGCAGTTAAAGTTCTTGCAACTAATTCTAAGCAAGGGGAGAAGGAATTTCAGACAGAGGTTATGTTGTTGGGAAGGTTACATCATAGAAATCTGGTCAATTTGGTGGGGTATTGTGCAGAAAAGGGGCAACATATGCTTGTATATGTCTACATGAGTAAAGGCAGCTTGGCTTCCCACTTGTATAGTGAAGAGAATGGAGCTCTGGGTTGGGATATGAGGGTTCATATAGCTTTAGACGTAGCAAGAGGCATAGAGTATCTTCATGATGGGGCAGTTCCTTCTGTAATCCATCGAGATATCAAATCTTCCAACATTCTCTTGGACCAGTCCATGCGAGCCAGGGTTGCTGATTTTGGACTCTCAAGAGAAGAGATGGTGGATAAACACGCTGCAATTCGGGGTACCTTTGGCTATCTTGACCCTGAGTATATATCTTCAGGGACATTCACCAAGAAAAGTGATGTATACAGTTTTGGGGTGTTGCTTTTTGAGCTTATAGCAGGCCGAAATCCTCAGCAAGGTCTTATGGAATATGTTGAGCTTGCAGCAATGAACACTGAGGGAAAAGTTGGTTGGGAGGAGATAGTTGATTCTCGGCTTGATGGAAAATGTGATTTTCAAGAGCTGAATGAAGTGGCAGCACTTGCCTACAAATGCATCAACCGTGCCCCAAAGAAACGCCCTTCCATGAGGGACATAGTGCAAGTGTTGACACGGATCCTCAAATCAAGGCACCAAAGGAATCATCATCACAATAAGTCCCTCTCAGTCACAGCAGATGAAGTTTCCATTGATGTTGATCAGCTAGAGACCAAGAGTTCTGTCACTGACCACAGAAGAGAAGAATCTATAGATAGTACAGCTGACATTTATGATGTGTAG 1296 0.4352 MKEESTGLIIGISIGVVIGVGLAISALFCLRYHRKRSQIGNSSSRRAATIPIRENGADSCTILSDSTLGPESPVRSGRNGMSFWLDGFKKSSNMVSASGIPEYSYKDLQKATYNFTTLIGQGAFGPVYKAQMSTGETVAVKVLATNSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVYMSKGSLASHLYSEENGALGWDMRVHIALDVARGIEYLHDGAVPSVIHRDIKSSNILLDQSMRARVADFGLSREEMVDKHAAIRGTFGYLDPEYISSGTFTKKSDVYSFGVLLFELIAGRNPQQGLMEYVELAAMNTEGKVGWEEIVDSRLDGKCDFQELNEVAALAYKCINRAPKKRPSMRDIVQVLTRILKSRHQRNHHHNKSLSVTADEVSIDVDQLETKSSVTDHRREESIDSTADIYDV 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03243 431 FunFam Calcium/calmodulin-regulated receptor-like kinase 1 86 188 - -
Pumo4g03243 431 PANTHER OS01G0750732 PROTEIN 4 401 - -
Pumo4g03243 431 MobiDBLite consensus disorder prediction 408 425 - -
Pumo4g03243 431 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Pumo4g03243 431 CDD STKc_IRAK 119 378 - -
Pumo4g03243 431 Gene3D Transferase(Phosphotransferase) domain 1 189 404 - -
Pumo4g03243 431 ProSiteProfiles Protein kinase domain profile. 113 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g03243 431 SMART serkin_6 113 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g03243 431 SUPERFAMILY Protein kinase-like (PK-like) 102 402 IPR011009 -
Pumo4g03243 431 MobiDBLite consensus disorder prediction 408 431 - -
Pumo4g03243 431 Pfam Protein tyrosine and serine/threonine kinase 115 375 IPR001245 GO:0004672|GO:0006468
Pumo4g03243 431 Gene3D Phosphorylase Kinase; domain 1 84 188 - -
Pumo4g03243 431 FunFam calcium/calmodulin-regulated receptor-like kinase 1 189 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03243 Pumo-Chr4 66763179 66768512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03243 24 375 Glycoside Hydrolase AT3G07070 38.814 9.71e-73 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Pumo4g03243 PK_Tyr_Ser-Thr 8.2e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03243 - - gmx:100799586 818.15