LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo4g03237	ATGGCAGTAGTCAGCATTGAAGAGAAGAAAACTCAAGAAGAATTCATTAGCCAATTGTTTGATCCAACATCTGGACTATTAACTGAGGACACGGCAGAGGTACTATGGATCACTTGCTGGGAAGATTTTATTCATTTAAAGAAAGAAGTTGGAGATCTTGACTTATGCCTCCCAAAGGAATCATACAGAAACACCAATGAAATTAGTTCAAAAATTGGCTCAATAGCTAGAGAAAACATCCGAAAATTGATTAATACCTGTTATCCTCAGTTAAAGGAAAATGTTCTTCACTGTTTGAGAAAAAATAATTTTCCATTCAATGTTCTCAAGGAAGAGGATGTGTCCAAGATTTGGCATGCCACTTACATGGGATCACTTTCTTCTAGAAGATATTTGGGTCAAGCTTTTCCCCAACATGTATCAGAAACAATTAAGGAAGATGGATCATCTATAAAGAAAAATTCTAAAGATCAAGACTCTGATAAAAAAGACAAAAAGAAGTCGAAGTCTTCTGACTCAAAGGATAAAAACAAAAGTACATCTATGACTATACCTATAGTGGTGGCATTATTAGGTGCAGCATTGCTCTTTTTATGTTGTTTTCGATTTTGTGGGAGTGGTCAAGTTAGACAAAATGATGAGAGACCCCTTCTCAGCATGAGCATGAGTGACTACTCAGTTGGTTCTTCTCCCAATAATAATCCATATAGTAACTCAATGAAAGAGGAGAAAATTGGGTTTCAATCATCAAGTAGCAAATTGGTTGATGACAAGATGAACTCAATGAAGGAAACTCAATTAGCAGGAGTAGGAGTTGCTAGTGCTGCTGCAAGACCATCATTTGAATTAAAACCTCCTCCTGGGAGAGTGATGAATAATGGAATGCTTCCTTTGAAACCTCCTCCTGGAAGGCCTGATCTTCTTCCTCCTCCTGAGCCATGTCCAATTAAGCCTTCTGATAATTCCATTGTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTGCTGCACCACCAAAGCCTAGTGGTGGTGCTGGCCCTCCACCTCCTAGCCACGGCCCCCGACCGCCGCCGCCTCCTCCTGGCAATGGCCCTAGACCTCCTCCACCACCACCACCTAGATCCAAGGCTGGTGGTCCTAGACCTCCACCACCTCCCAGAGCAGGTAGTGGAGGTCCTCCTAGACCACCTCCCCCATTTGGTTCAAAGAATGCTAGGGCTCAGGAGGAAGTTGGAGCCAATTCTGAAAGTGAATCTTATGCTAGTAATAAAGCTAAGCTAAAGCCTTTTTTCTGGGATAAGGTTCAAGCTAACTCAGATCAAACAATGGTCTGGAATCAACTCAAAGCAGGATCATTCCAGTTTAATGAAGAAATGATGGAGACACTTTTTTGTTATACTGCTACCACTGTGGATAAAGGCAAAGGCCAACAGAAAAAAGAGGCTTCTTCCCCAGCAGCTTCACCTCAATATATACAGATCATTGACTCAAAGAAATCACAAAATTTATCTATTCTATTGAAAGCATTGAATGTGACAATAGAAGAAGTTTGTGATGCACTTCTTGAAGGAAATGAGCTCCCCACAGAATTCCTTCAATCCTTATTGAAGATGGCACCAACATCAGAGGAAGAACTTAAGCTTAGACTTTTCAATGGTAATCTAGCCCAACTTGGGCCTGCAGATAGGTTCCTAAAAGCCCTAGTTGACATTCCATTTGCTTTTAAACGAATGGAGGCACTGCTTTACATGGGTACTCTTCAAGAGGAACTCACTAGTACTCGAGAAGCTTTTGCAATTTTAGAGGTTGCTTGTAAAAAGCTAAGAAGCAGTCGATTGTTCCTGAAGCTTCTTGAAGCTGTTCTCAAAACTGGCAACCGTATGAATGATGGAACATTCCGTGGTGGTGCACAAGCATTCAAACTCGACACACTGCTAAAACTATCTGATGTAAAAGGAGTGGATGGCAAGACCACTCTCTTGCACTTCGTTGTTCAAGAGATAATGCGCACTGAGGGCATAAGAGCTGCACGCATGGCAAAAGAGAGCCACAGTTTCTCTAGCATAAAAACTGAAGACCTTCTTGAGGACATAAATATTGAATCAGAAGACCAATATCGCGAACTTGGCCTTCAAGTGCTTTCACGTTTGAGCGGTGAACTTGAGAGTGTGAAGAAAGCAGCAGCATTAGATGCTGATGTCTTAGTAGGAACAACTTCTAGACTAGGTCATGGTCTCATAAAGACAAGAGACTTTATAAACAAAGACCTAAGTAACAACATAGATGGTGACAAAGGCTTTCATGAGACAGTGAAGAGTTTTGTGGAGCAAGCTGAGGTTGATGTCACGAGTTTGCTAGAAGAAGAGAAGAAAATCATGGCCCTAGTGAAAAGCACTGGTGATTACTTTCATGGGGATACAGGGAAGGATGAAGGGTTGAGATTGTTTGTAATAGTACGTGATTTCTTAGTGATGTTGGATAAGGTGTGCAGGGAGATAAAAGTTGCACCACCAAAGAAGCCAGCAGTGAAAAATAATAATGTGAAGCAAGAAACTTCTAATCATTCTAGAAAGCCCTCCTCCGAAATTCTTCCTCTTCCTCCTGATATTCGTCAGAGAATTTTTCCAGCAGTGGCAAATAGAAGGATGGATGACTTTAGTTCAGATGATGACAGTCCTTAG	2688	0.4167	MAVVSIEEKKTQEEFISQLFDPTSGLLTEDTAEVLWITCWEDFIHLKKEVGDLDLCLPKESYRNTNEISSKIGSIARENIRKLINTCYPQLKENVLHCLRKNNFPFNVLKEEDVSKIWHATYMGSLSSRRYLGQAFPQHVSETIKEDGSSIKKNSKDQDSDKKDKKKSKSSDSKDKNKSTSMTIPIVVALLGAALLFLCCFRFCGSGQVRQNDERPLLSMSMSDYSVGSSPNNNPYSNSMKEEKIGFQSSSSKLVDDKMNSMKETQLAGVGVASAAARPSFELKPPPGRVMNNGMLPLKPPPGRPDLLPPPEPCPIKPSDNSIVPPPPPPPPPPPPPAAPPKPSGGAGPPPPSHGPRPPPPPPGNGPRPPPPPPPRSKAGGPRPPPPPRAGSGGPPRPPPPFGSKNARAQEEVGANSESESYASNKAKLKPFFWDKVQANSDQTMVWNQLKAGSFQFNEEMMETLFCYTATTVDKGKGQQKKEASSPAASPQYIQIIDSKKSQNLSILLKALNVTIEEVCDALLEGNELPTEFLQSLLKMAPTSEEELKLRLFNGNLAQLGPADRFLKALVDIPFAFKRMEALLYMGTLQEELTSTREAFAILEVACKKLRSSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIMRTEGIRAARMAKESHSFSSIKTEDLLEDINIESEDQYRELGLQVLSRLSGELESVKKAAALDADVLVGTTSRLGHGLIKTRDFINKDLSNNIDGDKGFHETVKSFVEQAEVDVTSLLEEEKKIMALVKSTGDYFHGDTGKDEGLRLFVIVRDFLVMLDKVCREIKVAPPKKPAVKNNNVKQETSNHSRKPSSEILPLPPDIRQRIFPAVANRRMDDFSSDDDSP	895

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo4g03237	895	ProSiteProfiles	Formin homology-2 (FH2) domain profile.	419	854	IPR015425	-
	Pumo4g03237	895	Gene3D	Formin, FH2 domain	425	864	IPR042201	-
	Pumo4g03237	895	MobiDBLite	consensus disorder prediction	847	862	-	-
	Pumo4g03237	895	Pfam	Formin Homology 2 Domain	424	828	IPR015425	-
	Pumo4g03237	895	MobiDBLite	consensus disorder prediction	143	178	-	-
	Pumo4g03237	895	MobiDBLite	consensus disorder prediction	145	176	-	-
	Pumo4g03237	895	SMART	it6_source	419	843	IPR015425	-
	Pumo4g03237	895	PANTHER	FORMIN-RELATED	351	883	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015
	Pumo4g03237	895	SUPERFAMILY	Formin homology 2 domain (FH2 domain)	491	836	-	-
	Pumo4g03237	895	PRINTS	Proline rich extensin signature	331	352	-	-
	Pumo4g03237	895	PRINTS	Proline rich extensin signature	297	313	-	-
	Pumo4g03237	895	PRINTS	Proline rich extensin signature	318	330	-	-
	Pumo4g03237	895	PRINTS	Proline rich extensin signature	356	372	-	-
	Pumo4g03237	895	MobiDBLite	consensus disorder prediction	279	423	-	-
	Pumo4g03237	895	MobiDBLite	consensus disorder prediction	298	403	-	-
	Pumo4g03237	895	MobiDBLite	consensus disorder prediction	842	872	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo4g03237	Pumo-Chr4	66691456	66696363	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo4g03237	394	886	FH2 protein (formin) Gene Family	AT5G54650	61.694	0.0	580

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pumo4g03237	4	66691456	66696363	Pumo4g03237	4	66691456	66696363	ECH
	Pumo4g03237	4	66691456	66696363	Pumo11g00889	11	32813392	32814972	PCT