Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03235 ATGGTTTCCCCGGAAAACAGCAATTGGCTCTTCGATTACCCGTTGATCGACGACGTTATTCCCGTCGGCGACGCCTCCTTCACCGTCTCCGCTTCCGCCTTCTCCTGGCACCCACCACCTCCCTCCAATGTCAGTGTTGAAATTGATGCTTCACTTGGGGATTCTGATGGTCTCAAAGATCCTGCTTTGAAGAAGAGGGGTAGATCTGATTCATGTACTGCTTCTAGCTCTAAGGCATGTCGGGAGAAGTTGCGCAGGGATAGGCTTAATGACAAGTTTGTTGAATTGGGCTCCATCTTGGAGCCTGGAAGGCCTCCCAAAACAGACAAGGCTGCCATTCTGATTGATGCTGCCCGAATGGTGACACAGCTGCGGGATGAAGCCCAGAAGTTGAAAGACTCAAATACGAGTCTTCAAGAGAAGATTAAAGAGTTAAAGGCTGAGAAGAACGAACTTCGTGATGAGAAACAGAGGCTTAAGGTAGAGAAAGAGAAGTTGGAGCTGCAGGTAAAATCAATGAATGCCCAACCTGCTTTCATGCCACCCCCTCCTGCAATCCCTGCTGCATTTGCTCCACAAGGTCAAGCCCCCGGCAACAAGTTGGTGCCTTTCATCAGTTATCCGGGAGTTGCCATGTGGCAATTTATGCCTCCGGCCGCTGTGGATACCTCACAGGATCATGTACTCCGTCCACCAGTTGCCTAA 705 0.5035 MVSPENSNWLFDYPLIDDVIPVGDASFTVSASAFSWHPPPPSNVSVEIDASLGDSDGLKDPALKKRGRSDSCTASSSKACREKLRRDRLNDKFVELGSILEPGRPPKTDKAAILIDAARMVTQLRDEAQKLKDSNTSLQEKIKELKAEKNELRDEKQRLKVEKEKLELQVKSMNAQPAFMPPPPAIPAAFAPQGQAPGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03235 234 Gene3D - 76 154 IPR036638 GO:0046983
Pumo4g03235 234 MobiDBLite consensus disorder prediction 55 76 - -
Pumo4g03235 234 Pfam Helix-loop-helix DNA-binding domain 77 124 IPR011598 GO:0046983
Pumo4g03235 234 PANTHER BHLH TRANSCRIPTION FACTOR 4 234 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Pumo4g03235 234 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 78 148 IPR036638 GO:0046983
Pumo4g03235 234 CDD bHLH_AtILR3_like 78 153 - -
Pumo4g03235 234 FunFam Transcription factor bHLH104 76 157 - -
Pumo4g03235 234 Coils Coil 114 176 - -
Pumo4g03235 234 SMART finulus 79 130 IPR011598 GO:0046983
Pumo4g03235 234 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 73 124 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03235 Pumo-Chr4 66660219 66662380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03235 1 234 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 70.833 4.17e-115 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo4g03235 HLH 2.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03235 - - gmx:100801742 388.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03235 4 66660219 66662380 Pumo4g03235 4 66660219 66662380 ECH
Pumo4g03235 4 66660219 66662380 Pumo11g00891 11 32863457 32867654 PCT