Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03221 ATGGCACCCCCACATGGAGACACTGTGATTTACTGTTTACTTTTGCCTCTTATAATGAATGGATCATGCTTCAAGTCTGATGCAACAAGTCTTCAAATATATAGAAAGAGTTGCAGACTGAGGTGGATTAACAACCTCAAACCAGAGATAAAACGAGGAAACTTCAGAGTCGCAGAAGATCTCACCATTATTCAACTCCATGCTCTTCTTGGAAACAAATGGTCAATCACAGCATCTCACTTGTTGAAGAAAACAAACAATGAGATCATGAATTATTGGAACACCAACGTCAAGAAAAGGTTTATCAGAATGGGCATACATTCAATTACCCACAAACCAAAAGCCAACACCTTCAAAGCCTATGGTGGTGATCAGTTGAAGGACGTCATCAATATGAACCACATGACACAATGGGAGAGTGCTGAATTTGAAGCTCTAACCAGAGAATTCATGTTGCAAGTTGGATCTAGCTCCTTCGTTCCCCCAGTTCATTAG 495 0.404 MAPPHGDTVIYCLLLPLIMNGSCFKSDATSLQIYRKSCRLRWINNLKPEIKRGNFRVAEDLTIIQLHALLGNKWSITASHLLKKTNNEIMNYWNTNVKKRFIRMGIHSITHKPKANTFKAYGGDQLKDVINMNHMTQWESAEFEALTREFMLQVGSSSFVPPVH 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03221 164 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 47 101 IPR017930 -
Pumo4g03221 164 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 29 139 - -
Pumo4g03221 164 Pfam Myb-like DNA-binding domain 52 95 IPR001005 -
Pumo4g03221 164 ProSiteProfiles Myb-like domain profile. 47 97 IPR001005 -
Pumo4g03221 164 Gene3D - 54 100 - -
Pumo4g03221 164 CDD SANT 54 97 IPR001005 -
Pumo4g03221 164 SMART sant 51 99 IPR001005 -
Pumo4g03221 164 SUPERFAMILY Homeodomain-like 35 104 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03221 Pumo-Chr4 66366355 66367223 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03221 27 148 MYB Transcription Factor Family AT3G01140 57.377 6.42e-43 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pumo4g03221 Myb_DNA-binding 3.4e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03221 K09422 - gmx:100792464 178.718