LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo4g03200	ATGCATCACCGTAGATTCAACAAATTAATACATGTGGCTGACCCAGATGAGCCCGAGTCCGCCTCAGAAGCTGGGCCTGCTTCTCCTTCTTCCGGTGAAGACACTAAAACTGAAGAACCGTCACCCAAAAAAAGGAGGGAGATGAAGAAGAGGGTGGTGACGATACCGATCGGTGACGTGGATGGATCTAAGAGCAAAGGAGAGAATTATCCACCGTCTGATTCATGGGCCTGGAGGAAGTACGGCCAAAAGCCCATCAAAGGTTCCCCTTACCCAAGGGGATACTACCGATGCAGCAGTTCAAAGGGGTGTCCCGCAAGGAAGCAAGTTGAGCGAAGCCGTGTGGACCCCACAAAGCTCATAGTTACCTACGCTTATGAACACAACCACTCCCTCCCTCTGCCAAAATCAAATTCCTCCGCCGCTTGCGCCGTCGCAAGCGACGGCGCCGGAGCCTCGCCGGCGGAGTCCGCCGCCAGGTTCCCGCCGGAGGAGGAGATGACAGTGTTCGCGACGGACTCCGATCTCGAACTCGCCGGCGACGCGGCGGTGCTGCTCAGCCACCACCACCACTTCGGGTGGTTCGATGACGTGGCGTCGACCGGCGTGCTCGAGAGCCCGATCTGCGGCGAGGTGGATGACGTGGCGATGCCGATGAGGGAGGAGGACGAGTCGCTCTTCGCCGATCTCGGCGAGTTGCCGGAGTGCTCGGCGGTTTTCCGGCGGAGGAATATTCCGGCGACCAGCGCGATCCGGTGCGGCGGCATCACAAGATAG	777	0.592	MHHRRFNKLIHVADPDEPESASEAGPASPSSGEDTKTEEPSPKKRREMKKRVVTIPIGDVDGSKSKGENYPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRVDPTKLIVTYAYEHNHSLPLPKSNSSAACAVASDGAGASPAESAARFPPEEEMTVFATDSDLELAGDAAVLLSHHHHFGWFDDVASTGVLESPICGEVDDVAMPMREEDESLFADLGELPECSAVFRRRNIPATSAIRCGGITR	258

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo4g03200	258	MobiDBLite	consensus disorder prediction	36	54	-	-
	Pumo4g03200	258	MobiDBLite	consensus disorder prediction	1	74	-	-
	Pumo4g03200	258	SUPERFAMILY	WRKY DNA-binding domain	69	133	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pumo4g03200	258	Gene3D	WRKY domain	60	134	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pumo4g03200	258	PANTHER	WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED	17	238	IPR044810	GO:0003700
	Pumo4g03200	258	FunFam	WRKY transcription factor 65	59	133	-	-
	Pumo4g03200	258	Pfam	WRKY DNA -binding domain	74	130	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pumo4g03200	258	ProSiteProfiles	WRKY domain profile.	73	133	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pumo4g03200	258	SMART	WRKY_cls	72	132	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo4g03200	Pumo-Chr4	65642158	65644933	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo4g03200	3	245	WRKY Transcription Factor Family	AT3G58710	50.388	9.51e-74	224

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Pumo4g03200		WRKY	1.7e-24	CL0274