Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03200 ATGCATCACCGTAGATTCAACAAATTAATACATGTGGCTGACCCAGATGAGCCCGAGTCCGCCTCAGAAGCTGGGCCTGCTTCTCCTTCTTCCGGTGAAGACACTAAAACTGAAGAACCGTCACCCAAAAAAAGGAGGGAGATGAAGAAGAGGGTGGTGACGATACCGATCGGTGACGTGGATGGATCTAAGAGCAAAGGAGAGAATTATCCACCGTCTGATTCATGGGCCTGGAGGAAGTACGGCCAAAAGCCCATCAAAGGTTCCCCTTACCCAAGGGGATACTACCGATGCAGCAGTTCAAAGGGGTGTCCCGCAAGGAAGCAAGTTGAGCGAAGCCGTGTGGACCCCACAAAGCTCATAGTTACCTACGCTTATGAACACAACCACTCCCTCCCTCTGCCAAAATCAAATTCCTCCGCCGCTTGCGCCGTCGCAAGCGACGGCGCCGGAGCCTCGCCGGCGGAGTCCGCCGCCAGGTTCCCGCCGGAGGAGGAGATGACAGTGTTCGCGACGGACTCCGATCTCGAACTCGCCGGCGACGCGGCGGTGCTGCTCAGCCACCACCACCACTTCGGGTGGTTCGATGACGTGGCGTCGACCGGCGTGCTCGAGAGCCCGATCTGCGGCGAGGTGGATGACGTGGCGATGCCGATGAGGGAGGAGGACGAGTCGCTCTTCGCCGATCTCGGCGAGTTGCCGGAGTGCTCGGCGGTTTTCCGGCGGAGGAATATTCCGGCGACCAGCGCGATCCGGTGCGGCGGCATCACAAGATAG 777 0.592 MHHRRFNKLIHVADPDEPESASEAGPASPSSGEDTKTEEPSPKKRREMKKRVVTIPIGDVDGSKSKGENYPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRVDPTKLIVTYAYEHNHSLPLPKSNSSAACAVASDGAGASPAESAARFPPEEEMTVFATDSDLELAGDAAVLLSHHHHFGWFDDVASTGVLESPICGEVDDVAMPMREEDESLFADLGELPECSAVFRRRNIPATSAIRCGGITR 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03200 258 MobiDBLite consensus disorder prediction 36 54 - -
Pumo4g03200 258 MobiDBLite consensus disorder prediction 1 74 - -
Pumo4g03200 258 SUPERFAMILY WRKY DNA-binding domain 69 133 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo4g03200 258 Gene3D WRKY domain 60 134 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo4g03200 258 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 17 238 IPR044810 GO:0003700
Pumo4g03200 258 FunFam WRKY transcription factor 65 59 133 - -
Pumo4g03200 258 Pfam WRKY DNA -binding domain 74 130 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo4g03200 258 ProSiteProfiles WRKY domain profile. 73 133 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo4g03200 258 SMART WRKY_cls 72 132 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03200 Pumo-Chr4 65642158 65644933 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03200 3 245 WRKY Transcription Factor Family AT3G58710 50.388 9.51e-74 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pumo4g03200 WRKY 1.7e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03200 - - gmx:100170680 474.552