Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03196 ATGGCCTCTATGCCGTTGGGGCCGCAGCAGCAACAACAGCTTCAACCACCACCGCCGCAAGTGGCAGCTCCGCCGCAACAACCGCTGCAAGCGGAGAATGACCCGATGAAAGTGGACTCTCGCGGCGGCTCCGACGCCGGCGCCGAAAAGGAAATGTCAACTCCTGATGCAGATGGTAATGATGCACTCACTGGTCAGATAATCTCAACAACAATTGGAGGCAAAAATGGCGAACCTAAACGAACCGTCAGCTACATGGCTGAACGTGTTGTTGGCACTGGATCATTCGGAATTGTTTTCCAGGCAAAGTGCTTGGAGACTGGGGAGGCAGTGGCTATAAAGAAGGTCTTGCAGGACAGGCGATACAAAAATCGTGAACTGCAGTTAATGCGCATGATGGATCACCCAAATATAATTTCCCTGAGGCACTATTTCTTCTCTACAACAAGCAGAGATGAACTTTTTCTGAACTTGGTGATGGAATATGTCCCTGAGACGATCTTCCGAGTTATAAAGCACTACAGTAGTGTGAAACAGAGAATGCCCCTAATCTATGTGAAATTATATACATATCAAATCTTTAGGGGACTGGCGTATATCCATACTGTACCAGGAATTTGCCATCGGGATGTGAAGCCTCAAAATCTTTTGGTTGATCCACTCACACACCAAGTCAAGCTCTGCGATTTTGGGAGTGCAAAAGTTCTGGTGGAGGGTGAATCAAACATTTCATACATATGTTCACGGTACTATCGAGCCCCAGAACTAATATTTGGTGCGACAGAATACACAACTTCTGTTGATCTTTGGTCAGCTGGTTGTGTCCTTGCGGAACTTCTTCTAGGCCAGCCTTTGTTCCCCGGAGAAAATCAGGTCGACCAACTCGTGGAAATTATCAAGGTTCTTGGCACTCCTACTCGAGAAGAAATTCGATGCATGAATCCTAATTATACAGATTTCAGATTCCCCCATATCAAAGCTCATCCTTGGCATAAGGTTTTTAACAAGCGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTTCTCCAATATTCCCCAAAACTTCGTTACAGTGCAGTGGAAGCAATGGCACATCCTTTCTTCGACGAGCTCCGCGAGCCCAATGCCAGGCTACCTAACGGTCGTCCACTGCCTCCACTTTTCAACTTCAAACAGGAATTAGATGGAGCACCCCCTGAACTGCTTCCTAAGCTCATCCCAGAGCACATCAGGCGGCAAACCGGTCTTGGCTTTCTGTACTCGGCGGACACCCAAACCCAAACCCAAACCCAAACCCAAATGTAA 1308 0.4755 MASMPLGPQQQQQLQPPPPQVAAPPQQPLQAENDPMKVDSRGGSDAGAEKEMSTPDADGNDALTGQIISTTIGGKNGEPKRTVSYMAERVVGTGSFGIVFQAKCLETGEAVAIKKVLQDRRYKNRELQLMRMMDHPNIISLRHYFFSTTSRDELFLNLVMEYVPETIFRVIKHYSSVKQRMPLIYVKLYTYQIFRGLAYIHTVPGICHRDVKPQNLLVDPLTHQVKLCDFGSAKVLVEGESNISYICSRYYRAPELIFGATEYTTSVDLWSAGCVLAELLLGQPLFPGENQVDQLVEIIKVLGTPTREEIRCMNPNYTDFRFPHIKAHPWHKVFNKRMPPEAIDLASRLLQYSPKLRYSAVEAMAHPFFDELREPNARLPNGRPLPPLFNFKQELDGAPPELLPKLIPEHIRRQTGLGFLYSADTQTQTQTQTQM 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03196 435 FunFam Glycogen synthase kinase-3 beta 69 164 - -
Pumo4g03196 435 CDD STKc_GSK3 80 372 IPR039192 -
Pumo4g03196 435 MobiDBLite consensus disorder prediction 1 63 - -
Pumo4g03196 435 MobiDBLite consensus disorder prediction 11 25 - -
Pumo4g03196 435 Gene3D Phosphorylase Kinase; domain 1 70 164 - -
Pumo4g03196 435 SMART serkin_6 85 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g03196 435 ProSitePatterns Protein kinases ATP-binding region signature. 91 115 IPR017441 GO:0005524
Pumo4g03196 435 ProSiteProfiles Protein kinase domain profile. 85 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g03196 435 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 50 414 - -
Pumo4g03196 435 SUPERFAMILY Protein kinase-like (PK-like) 84 392 IPR011009 -
Pumo4g03196 435 Gene3D Transferase(Phosphotransferase) domain 1 165 412 - -
Pumo4g03196 435 FunFam Shaggy-related protein kinase kappa 165 412 - -
Pumo4g03196 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Pumo4g03196 435 Pfam Protein kinase domain 85 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03196 Pumo-Chr4 65595352 65600190 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03196 89 399 MAP Kinase Gene Family AT3G59790 35.583 4.77e-57 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Pumo4g03196 Pkinase 4.5e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03196 K14502 - gmx:100788319 771.926