Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03192 ATGGATGAGAGAATTTGCGTATCTGAAGAAGACAAGAGTGAAAGTAGCAAACCCTCTTCTCCAAGTCTTAGAAGAAAGCGTTCATTTTTCGATTTGAATGAAGAAGCTGTGGATGGTGGAGATGATAGCATCAGTGATGATGGCCCCATCAATAGCAATGACATTTCATCACAAGAAGGTAATTTGAGTAGCAACAATAACTCTAGTGAAGAAGGGAAAGAGCGTGCAACTACGGTTAGGCAATATGTGCGGTCCAAAATGCCAAGGCTTCGTTGGACTCCTGATCTCCATTTAGCTTTTGTGCATGCTGTTGAGAGGCTTGGTGGACAAGAAAGAGCAACGCCCAAGTTGGTTCTCCAGTTGATGAATGTGAAAGGACTTAGCATTGCACATGTAAAGAGCCATTTGCAGATGTACCGAAGTAAAAAGCTTGATGAGTCTGGCCAAGTTTTATCCCACAATAGGGCAATGCAAGGAAGGCATAGTATTTTTGATATGTACGGAAGACTCAATGCCCCACGGCACTTTGGGAACCATTTGCCATCGTCTCTGCTTATGGAACAAACACCTTATGAAATCAGTGCTCATGGCTCTTCAAGACTACACCCGACAGGACTTTTCAATAGTCACATGATGATAAGATCAAGTTCAGTGTGGGACAAAGATTTATATAATTATCAGTATCCACGTAGTTTCTGCAGTCCCAACTTCATTGGCCACACGAAGTTTGATGCTGAGGTTCATGATGTGAAAAATCGAATGCCAGAATTCATAAATCAGGTTCAAGTGTGGAAACAAGGTCACATCAAAGATCAATTAGAGAAGTTGAATGAGAAGAAAGGGTCCCCTAGTTTCTTGGAGCTAAAACTAAGTCAAGATTCAAGAAATGTTAGAGATCATCAGATGAACAAAGATCCAGAAAGTGAACAAGAAATTAATACGAGACTCTCTCTTTCGTTGTTCACTTCCTCATCATCCTCAAATTCATCACAACAAGCACAATGTAGTGAAAAGCATAAAGACAATACCCATTTTGAGAGTTTTTGTTTTCAAAATTATGCACCAAGGAGTCGTTTGGGCTGA 1083 0.4063 MDERICVSEEDKSESSKPSSPSLRRKRSFFDLNEEAVDGGDDSISDDGPINSNDISSQEGNLSSNNNSSEEGKERATTVRQYVRSKMPRLRWTPDLHLAFVHAVERLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDESGQVLSHNRAMQGRHSIFDMYGRLNAPRHFGNHLPSSLLMEQTPYEISAHGSSRLHPTGLFNSHMMIRSSSVWDKDLYNYQYPRSFCSPNFIGHTKFDAEVHDVKNRMPEFINQVQVWKQGHIKDQLEKLNEKKGSPSFLELKLSQDSRNVRDHQMNKDPESEQEINTRLSLSLFTSSSSSNSSQQAQCSEKHKDNTHFESFCFQNYAPRSRLG 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03192 360 MobiDBLite consensus disorder prediction 1 21 - -
Pumo4g03192 360 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 65 281 IPR046955 GO:0003700
Pumo4g03192 360 Gene3D - 87 144 - -
Pumo4g03192 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 144 IPR017930 -
Pumo4g03192 360 MobiDBLite consensus disorder prediction 292 311 - -
Pumo4g03192 360 MobiDBLite consensus disorder prediction 46 72 - -
Pumo4g03192 360 SUPERFAMILY Homeodomain-like 86 142 IPR009057 -
Pumo4g03192 360 FunFam Myb family transcription factor 86 144 - -
Pumo4g03192 360 NCBIfam myb-like DNA-binding domain, SHAQKYF class 88 143 IPR006447 GO:0003677
Pumo4g03192 360 Pfam Myb-like DNA-binding domain 90 140 IPR001005 -
Pumo4g03192 360 MobiDBLite consensus disorder prediction 1 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03192 Pumo-Chr4 65524175 65527172 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03192 79 147 G2-like Transcription Factor Family AT2G42660 82.609 7.07e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pumo4g03192 Myb_DNA-binding 5.6e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03192 - - gmx:102668520 558.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03192 4 65524175 65527172 Pumo4g03192 4 65524175 65527172 ECH