Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03178 ATGGTTCATCTTCGTCTCTTAGTGTTGGATAAGGAGAAGGGAGAGCTTGTAGAGGCACCTGTCAAATTGGAACGCAAGGGTGTGTCCCCTGAGAGAAGCATTGAAGCCTTGAAGAACCATAGTGAGGCAGAGAGGAGAAGGAGAGCAAGAATTAATGCACATCTTGATACACTTCGCTCTGTCATTCCAGGTGCTAAGAAGTTGGACAAAGCAACCTTGCTGGGTGAGGTCATTAGACATTTGAAAGAGCTGAAAACGGATGCAGCACAAGCTAGTGAAGGCCTAATGATACCAAAGGACAGTGATGAAATAAGAGTTGAGGAACAGGAGGGTGGGTTGAATGGTTTCCCTTACTCAATCAGGGCATCACTATGCTGTGAATACAAACCCGGGTTATTGACTGATATAAGACAAGCACTTGATGCACTTCATCTTATGATAATAAGGGCTGAGATTGCAACCTTGGGAGGAAGGATGAAGAATGTGTTTGTGATAATTAGCTGCAAAGAACAAAATGTTGAAGATGCCGAGTACCGCCAGTTTCTGGCAGGGTCTGTTCATCAAGTTCTAAGATCTGTGTTAGATAGATTTTCTGTTTCACAGGACATGTTAGAAAGCAGGAAGAGAAGGAGGATTTCTATATTCAGTTCTTCATCTATTGGAGATTTCTTATGA 675 0.4281 MVHLRLLVLDKEKGELVEAPVKLERKGVSPERSIEALKNHSEAERRRRARINAHLDTLRSVIPGAKKLDKATLLGEVIRHLKELKTDAAQASEGLMIPKDSDEIRVEEQEGGLNGFPYSIRASLCCEYKPGLLTDIRQALDALHLMIIRAEIATLGGRMKNVFVIISCKEQNVEDAEYRQFLAGSVHQVLRSVLDRFSVSQDMLESRKRRRISIFSSSSIGDFL 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03178 224 SMART finulus 41 90 IPR011598 GO:0046983
Pumo4g03178 224 CDD ACT_UUR-ACR-like 123 165 - -
Pumo4g03178 224 Pfam Helix-loop-helix DNA-binding domain 39 84 IPR011598 GO:0046983
Pumo4g03178 224 PANTHER TRANSCRIPTION FACTOR BHLH30 20 216 IPR045847 GO:0003700|GO:0006355
Pumo4g03178 224 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 39 90 IPR036638 GO:0046983
Pumo4g03178 224 Gene3D - 31 93 IPR036638 GO:0046983
Pumo4g03178 224 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 35 84 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03178 Pumo-Chr4 65312670 65314810 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03178 3 220 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 37.500 8.82e-34 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo4g03178 HLH 3.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03178 - - gmx:100783322 378.637