Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03165 ATGAGTTACTTCGATGATGATCAGGATCATGGCCCATTCCACGATCACAACAACGACTTCAACAGAAGGATACTCATCATGGCCATAGTTTCCTTATCAGTGGTCTTGGTTCTCGTCTTTGCACTTCACCTCTATGCAAGGTTCTTCCTCAGGCGCCAAACACGCCGCAGAGCCGCCATATACCAACTAAGCCTCAACGTGGCTCACGCTCACGCTGAGCCACCCAACACAGGACTCGACCCTACCCTCATCACCACTCTCCCCACCTTCCCCTTCAAACAAAACCACGATTCCGTTGAGTGTGCCGTGTGCTTGAGCGTTCTAGAAGACGGAGAACACGTGAGGCTTCTTCCCAATTGCAAACACAGTTTCCACGTTGGTTGCATCGACACGTGGCTCGCCTCGCACTCCACGTGTCCCATTTGCCGAACCAAGGCCGAACCGGTCCGGCTAGAACCGCAGCCGCGTGAGGGCCCCACTGGTTTGGTTCTTGTCGATGTTGCACCCACGGCTCCGCTATTGTTCGAAAACGTAGAAGGAACCTCGGACGGTGCTAATAACAACGGGTCACCTAAAATTAGTGGTTCGAATTCGAGGTTGAGTTCGTTCCGAAGGATTCTTAGTAGGGAGAGATCTATGAGGAGAATCCAACCCTCTAGCCATGATGATGTTGAACATGATTTAGAAAGGCAGTGA 696 0.5172 MSYFDDDQDHGPFHDHNNDFNRRILIMAIVSLSVVLVLVFALHLYARFFLRRQTRRRAAIYQLSLNVAHAHAEPPNTGLDPTLITTLPTFPFKQNHDSVECAVCLSVLEDGEHVRLLPNCKHSFHVGCIDTWLASHSTCPICRTKAEPVRLEPQPREGPTGLVLVDVAPTAPLLFENVEGTSDGANNNGSPKISGSNSRLSSFRRILSRERSMRRIQPSSHDDVEHDLERQ 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03165 231 SMART ring_2 101 142 IPR001841 -
Pumo4g03165 231 CDD RING-H2_EL5-like 100 143 - -
Pumo4g03165 231 FunFam E3 ubiquitin-protein ligase ATL6 67 149 - -
Pumo4g03165 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 149 IPR013083 -
Pumo4g03165 231 Pfam Ring finger domain 100 143 IPR001841 -
Pumo4g03165 231 MobiDBLite consensus disorder prediction 179 231 - -
Pumo4g03165 231 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 16 150 - -
Pumo4g03165 231 SUPERFAMILY RING/U-box 94 149 - -
Pumo4g03165 231 MobiDBLite consensus disorder prediction 204 231 - -
Pumo4g03165 231 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Pumo4g03165 231 MobiDBLite consensus disorder prediction 180 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03165 Pumo-Chr4 65199891 65200935 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03165 6 230 C3H Transcription Factor Family AT2G42360 47.561 5.11e-58 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03165 K19038 - gmx:100780265 357.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03165 4 65199891 65200935 Pumo4g03165 4 65199891 65200935 ECH