Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03154 ATGCTAGAAAAGATGGATGATGGAGGAATCTCAAATGCTTTCCCTCACCAGAACCCTTCAACTGCTGCATCTAATAATCAGCCTCCTGTCTTGAAGAGGAAGAGAAACCTCCCTGGAAATCCAGATCCTGAAGCAGAAGTGATAGCCCTATCACCAAAGACTCTGATGGCCACGAACAGATTCGTGTGTGAAATTTGTCTCAAGGGTTTTCAAAGGGACCAAAACCTTCAACTCCATCGACGAGGGCACAACCTTCCTTGGAAGCTGAAGCAGAGAACAAGCAAAGAAGTGAGGAAGCGAGTTTATGTGTGTCCAGAGAAGACATGTGTCCACAACCACCCTTCAAGGGCTCTGGGAGACTTAACCGGGATAAAGAAGCACTTCTGCAGAAAGCATGGTGAGAAGAAGTGGAAGTGCGAGAAGTGCTCAAAGCGTTATGCTGTGCAGTCAGATTGGAAAGCACACTCAAAAACCTGTGGCACCAGAGAATACAAATGTGACTGTGGCACTATCTTTTCACGGAGGGATAGCTTCATCACTCACAGGGCCTTCTGCGATGCCTTAGCAGAAGAAACAGCTAGGGTGAACGCATCAACAAACATGAGCAGCTACAGCATCATGCAAAATGCCCTTGGTCCTAACATGGCAACCCATTTTTCATCATTTTTCAAGCCAAATTCATGCCCTGAGGAGCCAGCCCCAGGTAACCAAACATCTAATAAGGGCCTATCCCTTTGGATGACTCAAACATCTCAGCCTCATGAGACAATGGCCAACAACAACAACATGCATGAGTTTCATCAACTTGGGTCTGCTACAAGCCCAACAGCAATTTATGGTGGTGGTGGCAATCCACTTGCTTTAGGCTCAAATCCACAACCCTCTAATTACCAGCTAAATTGGGTGTTTGGAAATAAACTCTCCTCCAATGGAAGCCATCAAGAGCTAACTAGCGCTGCTTCACTTCCACTAGTCAACAACATTGTTAAGGATAACCCACACCTGCAACCCATAAGTGTTCCTTCCTTGTATAGCTCACAACACCAATCCCATCAAATAACCTCAGCAAACATGTCAGCCACAGCTTTGTTGCAAAAAGCTGCACAAATTGGGACAACTTCATCGGACCCATCATTATTCCTTGGGAACATAGGTTTGAAATGCAACAGTCCAGGCCAAGATGGGAACAAATTTTGTGGCATGTACGGTTCAAGTTCAGTAATCACAAGTCATGGAAGCGAGGCAGAGAATAATTATTCAGGTGATTTGTCACAAATGCCCCCTACAAAACGACGGCATGTACAGAATGAAGAGAGTGCATGGGGACAAACTAGGGATTTTCTTGGTGTTGGTGGTGCCAACCATTTGCCAACCTTCATCAATCAACGGATGGATTTGATTTGA 1404 0.4544 MLEKMDDGGISNAFPHQNPSTAASNNQPPVLKRKRNLPGNPDPEAEVIALSPKTLMATNRFVCEICLKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHNHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVNASTNMSSYSIMQNALGPNMATHFSSFFKPNSCPEEPAPGNQTSNKGLSLWMTQTSQPHETMANNNNMHEFHQLGSATSPTAIYGGGGNPLALGSNPQPSNYQLNWVFGNKLSSNGSHQELTSAASLPLVNNIVKDNPHLQPISVPSLYSSQHQSHQITSANMSATALLQKAAQIGTTSSDPSLFLGNIGLKCNSPGQDGNKFCGMYGSSSVITSHGSEAENNYSGDLSQMPPTKRRHVQNEESAWGQTRDFLGVGGANHLPTFINQRMDLI 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03154 467 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Pumo4g03154 467 Gene3D Classic Zinc Finger 94 185 - -
Pumo4g03154 467 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Pumo4g03154 467 FunFam protein indeterminate-domain 12-like 40 108 - -
Pumo4g03154 467 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 454 IPR031140 -
Pumo4g03154 467 MobiDBLite consensus disorder prediction 1 45 - -
Pumo4g03154 467 FunFam protein indeterminate-domain 5, chloroplastic-like 115 194 - -
Pumo4g03154 467 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Pumo4g03154 467 MobiDBLite consensus disorder prediction 13 31 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03154 Pumo-Chr4 65058782 65062192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03154 28 451 IDZ Gene Family AT1G03840 51.386 7.31e-135 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo4g03154 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03154 K25870 - gmx:100778666 865.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03154 4 65058782 65062192 Pumo4g03154 4 65058782 65062192 ECH