Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03151 ATGGCTCATCATCAGCAGAGAGGTCAACCTTCTTCAACCAAAGGGATCGAAAGAAGGATTCTTGAAAATAACAGGAGAAACCATATGAGGGACCTCTGTTACATGCTTAACTCTCTTCTCCCTAACAATAATATTCCCAGGGGAGGAGCATTATCACGTGTTGATCAAATAGACGAGGCTATCAACTACATCAAGAACTTAGAGACAAAGGTGAAGATGGCGCAGGAGAAGAAAGAAAGCTTAATGCAAAGGAAGAGATCTCGCAGTGACAGTCGTTCCAGTGCTTCTGAAGCACCAAAAATCGAGATTCATGAAATTGGTTCCTCACTACAAATCATTCTGACGAGTGGATTTGATAACCAGTTCATTTTGAGTGAAATTATTCGCATACTGCATGAAGAGAACATAGAGGTCAAGAGTGCCAATTCCTCACTCGCTGGAAACTCAATGCGACATGTGGTGCACGCAGAACAATTCTTTCAAGTAGGAACAACCGCAATGAGTGAGAGACTGAAAAGGTTTGTGGACGGACATTGGGAATACTTCTAA 549 0.4226 MAHHQQRGQPSSTKGIERRILENNRRNHMRDLCYMLNSLLPNNNIPRGGALSRVDQIDEAINYIKNLETKVKMAQEKKESLMQRKRSRSDSRSSASEAPKIEIHEIGSSLQIILTSGFDNQFILSEIIRILHEENIEVKSANSSLAGNSMRHVVHAEQFFQVGTTAMSERLKRFVDGHWEYF 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03151 182 MobiDBLite consensus disorder prediction 75 100 - -
Pumo4g03151 182 Pfam Helix-loop-helix DNA-binding domain 18 68 IPR011598 GO:0046983
Pumo4g03151 182 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 19 85 IPR036638 GO:0046983
Pumo4g03151 182 MobiDBLite consensus disorder prediction 75 99 - -
Pumo4g03151 182 Coils Coil 57 84 - -
Pumo4g03151 182 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 12 175 - -
Pumo4g03151 182 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 13 67 IPR011598 GO:0046983
Pumo4g03151 182 Gene3D - 17 92 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03151 Pumo-Chr4 64939909 65044132 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03151 4 177 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 32.275 6.32e-21 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo4g03151 HLH 0.00012 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03151 - - pvu:PHAVU_005G102700g 219.55