Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03150 ATGGCTCATCATCAGCAGAGAGGTCAACCTTCTTCAACCAAAGGGATCGAAAGAAGGATTGTTGAAAAAAACAGGAGAAACCATATGAGGGACCTCTGTTACATGCTTAACTCTCTTCTCCCTAACAATAATATTCCCGGGGGAGGAGCATTATCACGTGCTGATCAAATAAACGAGGCTATCAACTACATCAAGAACTTAGAGACAAAGGTGAAGATGGCGCAGGAGAAGAAAGAAAGCTTAATGCGAAGGAAGAGATCTCGCAGTGACAGTAGTTCCAGTGCTTCTGAAGCACCAAAAATTGAGATTCATGAAATTGGTTCCTCACTACAAATCATTCTGACGAGTGGATTTGATAACCAGTTCATTTTGAGTGAAATTATTCGCATACTACATGAAGAGAACATAGAGGTCAAGAGTGCCAATTCTTCACTCGCTGGAAACTCAATGCGACATGTTGTGCACGCAGAACAATTTCAACTAGGAACAACCGCAATGAGTGAGAGACTGAAAAGGTTCGTGGACGCACATCGGGAATACTTCTATGGCCCATAG 555 0.4252 MAHHQQRGQPSSTKGIERRIVEKNRRNHMRDLCYMLNSLLPNNNIPGGGALSRADQINEAINYIKNLETKVKMAQEKKESLMRRKRSRSDSSSSASEAPKIEIHEIGSSLQIILTSGFDNQFILSEIIRILHEENIEVKSANSSLAGNSMRHVVHAEQFQLGTTAMSERLKRFVDAHREYFYGP 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03150 184 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 12 173 - -
Pumo4g03150 184 MobiDBLite consensus disorder prediction 75 91 - -
Pumo4g03150 184 MobiDBLite consensus disorder prediction 75 100 - -
Pumo4g03150 184 Coils Coil 57 84 - -
Pumo4g03150 184 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 13 67 IPR011598 GO:0046983
Pumo4g03150 184 Pfam Helix-loop-helix DNA-binding domain 18 68 IPR011598 GO:0046983
Pumo4g03150 184 Gene3D - 16 97 IPR036638 GO:0046983
Pumo4g03150 184 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 18 84 IPR036638 GO:0046983
Pumo4g03150 184 SMART finulus 19 73 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03150 Pumo-Chr4 64920750 64922079 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03150 4 176 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 33.333 2.02e-22 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo4g03150 HLH 1.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03150 - - pvu:PHAVU_005G102700g 229.565