Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03149 ATGGATCAACAACAGGGAAGTCAACCTTCTTCATCCAGAGTCGAGAGAAAGGTTGTAGAGAAAAACAGGAGAAACCACATGAAGAACCTCCATTCCGTACTCAACTCTCTTCTCCCTACCCATAATCCCAAGGACGCGATGCCACTGCCTGATCAAATTGATAAAGCAATAAAGTACATCAAAAGCCTAGAGGCACAAATTAAGATGGCGCAGGAGAAGAAAGAAAAGTTCATGGAAAGGAAGAGAACTCGTGGTGACTGGTCGAGTTCTTCTGGAGCACAAGGAAGCCTAAAACCGCCAAAAATCGAGATTCATGAAACGGGTACTGCGCTTGAAGTCATTCTAACATGCGGGGTCGATAACCAGTTCATGTTCTGTGAAATTATTCGAATGCTGCATGAAGAGAACGTCGAGGTCATCAGTGCCAACTCTTCAACGGTTGGAGATTCAGTGATTCATGTTGTGCACGGCGAGAGAAGCTCTCTCTTTCTGACTCACTTTCTCTTTCTTAACAACGACTATAACGACCGCTACTACATATCGAGACAGCCGCCACTCCTCCGCCTCTCCACTGGAGCAGATTAA 585 0.4564 MDQQQGSQPSSSRVERKVVEKNRRNHMKNLHSVLNSLLPTHNPKDAMPLPDQIDKAIKYIKSLEAQIKMAQEKKEKFMERKRTRGDWSSSSGAQGSLKPPKIEIHETGTALEVILTCGVDNQFMFCEIIRMLHEENVEVISANSSTVGDSVIHVVHGERSSLFLTHFLFLNNDYNDRYYISRQPPLLRLSTGAD 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03149 194 MobiDBLite consensus disorder prediction 78 100 - -
Pumo4g03149 194 Gene3D - 2 88 IPR036638 GO:0046983
Pumo4g03149 194 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 11 63 IPR011598 GO:0046983
Pumo4g03149 194 Pfam Helix-loop-helix DNA-binding domain 13 64 IPR011598 GO:0046983
Pumo4g03149 194 Coils Coil 53 80 - -
Pumo4g03149 194 MobiDBLite consensus disorder prediction 1 25 - -
Pumo4g03149 194 FunFam Transcription factor bHLH162 5 89 - -
Pumo4g03149 194 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 9 80 IPR036638 GO:0046983
Pumo4g03149 194 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 10 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03149 Pumo-Chr4 64796054 64798422 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03149 1 156 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 40.244 1.76e-30 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo4g03149 HLH 6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03149 - - gmx:100784042 241.506