Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03144 ATGGATCAACAACAGGGAAGTCAACCTTCTTCATCCAGAGTCGAGAGAAAGGTTGTAGAGAAAAACAGGAGAAACCACATGAAGAACCTCTATTCCGCAATCAACTCTCTTCTCCCTACCCATAATCCCAAGGACGCGATGCCACTGCCTGATCAAATTGATGAAGCAATAAAGTACATCAAAAGCCTAGAGGCACAAATTAAGATGGCGCAGGAGAAGAAAAAAAGTTCATGGAAAGGAAGAGAACTAGTGGTGGCTGCTCGAGTTCTTCTGGAGCACAAGGAAGCCTAA 291 0.4433 MDQQQGSQPSSSRVERKVVEKNRRNHMKNLYSAINSLLPTHNPKDAMPLPDQIDEAIKYIKSLEAQIKMAQEKKKSSWKGRELVVAARVLLEHKEA 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03144 96 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 9 78 IPR036638 GO:0046983
Pumo4g03144 96 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 11 63 IPR011598 GO:0046983
Pumo4g03144 96 FunFam Transcription factor bHLH162 5 86 - -
Pumo4g03144 96 Coils Coil 53 73 - -
Pumo4g03144 96 Gene3D - 2 89 IPR036638 GO:0046983
Pumo4g03144 96 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 10 77 - -
Pumo4g03144 96 Pfam Helix-loop-helix DNA-binding domain 13 64 IPR011598 GO:0046983
Pumo4g03144 96 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03144 Pumo-Chr4 64647556 64648382 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03144 1 76 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 44.737 1.00e-16 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo4g03144 HLH 5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03144 - - gmx:100784042 113.235