Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03142 ATGGATCAACAACAGGGAAGTCAACCTTCTTCATCCAGAGTCGAGAGAAAGGTTGTAGAGAAAAACAGGAGAAACCACATGAAGAACCTCCATTCCGTACTCAACTCTCTTCTCCCTACCCATAATCCCAAGGACGCGATGCCACTGCCTGATCAAATTGATAAAGCAATAAAGTACATCAAAAGCCTAGAGGCACAAATTAAGATGGCGCAGGAGAAGAAAGAAAAGTTCATGGAAAGGAAGAGAACTCGTGGTGACTGCTCGAGTTCTTCTGGAGCACAAGGAAGCCTAAAACCGCCAAAAATCGAGATTCATGAAACGGGTACTGCGCTTGAAGTCATTCTAACATGCGGGGTCGATAACCAGTTCATGTTCTGTGAAATTATTCGAATGTTGCATGAAGAGAACGTCGAGGTCATCAGTGCCAACTCTTCAACGGTTGGAGATTCAGTGATTCATGTTGTGCATGGGGAGGTTCGGCAATCTATCTTTCAATTGGGAGCGACCAAAGTGAGTGAGAAGCTGAAATGGTTTGTAAACGGATCCTTCAGTGATGTGGAAATGGAGCCTGAATTAATGTGGGATTTTGAAATTGATACTACTGAGCCGTGGGGGCTTCTAGATCTTACACTGGACAATGGCTTACCACCAAATCCTTTGTAA 663 0.4419 MDQQQGSQPSSSRVERKVVEKNRRNHMKNLHSVLNSLLPTHNPKDAMPLPDQIDKAIKYIKSLEAQIKMAQEKKEKFMERKRTRGDCSSSSGAQGSLKPPKIEIHETGTALEVILTCGVDNQFMFCEIIRMLHEENVEVISANSSTVGDSVIHVVHGEVRQSIFQLGATKVSEKLKWFVNGSFSDVEMEPELMWDFEIDTTEPWGLLDLTLDNGLPPNPL 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03142 220 FunFam Transcription factor bHLH162 5 89 - -
Pumo4g03142 220 MobiDBLite consensus disorder prediction 78 100 - -
Pumo4g03142 220 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 11 63 IPR011598 GO:0046983
Pumo4g03142 220 Coils Coil 53 80 - -
Pumo4g03142 220 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 10 177 - -
Pumo4g03142 220 MobiDBLite consensus disorder prediction 1 25 - -
Pumo4g03142 220 Gene3D - 2 89 IPR036638 GO:0046983
Pumo4g03142 220 Pfam Helix-loop-helix DNA-binding domain 13 64 IPR011598 GO:0046983
Pumo4g03142 220 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 9 80 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03142 Pumo-Chr4 64557213 64558647 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03142 1 181 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 38.421 3.96e-32 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo4g03142 HLH 7.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03142 - - gmx:100784042 349.747