Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03138 ATGGTTGCCGCTGAAAGGTTGGAGCTTTGTTTGTGTAAGAGGAGGAGGGGGTTGGGAATTTTGTTGCGGATTGCATTTGGGTGGTGGGTGGTTCTAGTGTTGTTGGTTAATCCTGTGGCGGGTCTCAGACCCTTGAGGGAGAGAACTAGGTCCTGGGATGATGAGGGGCTATTTACAAGAAAGGAGGAGAGCAACTTAGGTCCATTTTCACAATGGAACATAACAGGAACTTACAAAGGGACTTGGAAGTTTTTAGATATCACAAATGGCTCTTCCAGATTTCCAGACATCAGAAAAACAAATGGAAATTCTGTAATTGAATTAGTTAGTACACCCACAAAGATAAGTGGAGTACATTATGTTCAGGGGGTAGTTATATTCCATGATGTGTTTGACAATGAGTACGATGTTGGTGGTGCTCAAATCAGAATAGAAGGTGTATATATATGGCCTTTTAGACAGCTTCGAATGGTAGCCAACAGTGGAAAAGAGGGAGAGTTGAATCAGAATGAAGATTATATTTTATCTAATCCATATCATCTGCTTGGAGTTTTCTCATCTCAGGTACTGCAAGATTCTTCGCGAGATAAGATGTGGAGAAGAAAACATTCTCTGATTCATAACATGGAGAAACATTGTAATATTGAAGTTGCTGCTCAGATTTCACGCTTGCCATCACCAAATAATGAAGGTGAACATGATCATTTTCATCTAGAAGGGCTAATGGAGAGTCCCTCAGCTGATGATGATGGGGACTGCTTCTCACCATTACTGTTAAATGCAACATCTGTCAAAATTGAGGTCTACTATAACAAAGCAGTGAACTATACCTTGATGGTCACTTTTGTCTCTTTCTTGCAAGTCCTTCTATTAATTCGTCAAATGGAGCATAGCAGCACTCAATCTGGCGCTGCTAAGGTTTCAATATTAATGATTGGCCAGCAAGCAATAATGGATGCCTATCTTTGCCTTTTACATCTGACTGCAGGAATACTAGTTGAATCCTTGTTTAATGCTTTTGCAACTGCTGCATTTTTCAAGTTTGTAGTTTTCTCAATATTTGAGATGAGATACCTCCTTGCTATCTGGAAGGCGAATAGGCCTTTGAGTAACGGGGAAGGTTGGGAAACAATGAGGCGAGAACTTTCAGTTTTATACAGTCGTTTCTATGGGATCTTGTTGGGAGGCATTCTACTCATGTACGAGTTCCATAATTATTTGAGACCTATTCTTCTTCTTATGTACTCTTTTTGGATACCTCAGATAATCACCAATGTTATTCGCGATTCACGCAAACCATTGCATCCTCATTATATCTTAGGGATAACTGTTACTCGGCTAGCAATCCCATTATATATTTTTGGTTGCCCTAACAACTTCATGCGCATAGAACCAGACAAGAGCTGGTGTGTTTGTTTGGCTGTATTTATTGGACTTCAAGCTGCAACTCTCCTACTTCAGCACTATCTTGGGTCACGTTGGTTCATTCCTCGTCAGATTCTCCCTGAGAAATACAGCTATTGTAGGAGGTTTGATCAGGAAACAAGACATGCTACCGACTGTGTTATTTGCATGACAGCCATTGATCTTTCCCAGCGATCCAATGATTGCATGGTGACACCTTGTGATCATTTCTTCCACTCTGGCTGTTTGCAAAGATGGATGGATATAAAGATGGAGTGCCCAACTTGCCGGCGCCCACTACCCCCTGCCTAG 1716 0.4132 MVAAERLELCLCKRRRGLGILLRIAFGWWVVLVLLVNPVAGLRPLRERTRSWDDEGLFTRKEESNLGPFSQWNITGTYKGTWKFLDITNGSSRFPDIRKTNGNSVIELVSTPTKISGVHYVQGVVIFHDVFDNEYDVGGAQIRIEGVYIWPFRQLRMVANSGKEGELNQNEDYILSNPYHLLGVFSSQVLQDSSRDKMWRRKHSLIHNMEKHCNIEVAAQISRLPSPNNEGEHDHFHLEGLMESPSADDDGDCFSPLLLNATSVKIEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSSTQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKANRPLSNGEGWETMRRELSVLYSRFYGILLGGILLMYEFHNYLRPILLLMYSFWIPQIITNVIRDSRKPLHPHYILGITVTRLAIPLYIFGCPNNFMRIEPDKSWCVCLAVFIGLQAATLLLQHYLGSRWFIPRQILPEKYSYCRRFDQETRHATDCVICMTAIDLSQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLPPA 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03138 571 PANTHER RING ZINC FINGER PROTEIN 122 570 - -
Pumo4g03138 571 Coils Coil 571 571 - -
Pumo4g03138 571 CDD RING-H2_TUL1-like 515 570 - -
Pumo4g03138 571 SMART ringv_2 520 565 IPR011016 GO:0008270
Pumo4g03138 571 Pfam Ring finger domain 520 565 IPR001841 -
Pumo4g03138 571 SUPERFAMILY RING/U-box 511 570 - -
Pumo4g03138 571 SMART ring_2 521 564 IPR001841 -
Pumo4g03138 571 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 506 571 IPR013083 -
Pumo4g03138 571 FunFam E3 ubiquitin-protein ligase, putative 507 571 - -
Pumo4g03138 571 ProSiteProfiles Zinc finger RING-type profile. 521 565 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03138 Pumo-Chr4 64314742 64324475 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03138 521 568 C3H Transcription Factor Family AT4G12190 37.500 2.79e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03138 K23788 - gmx:100780140 1072.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03138 4 64314742 64324475 Pumo4g03138 4 64314742 64324475 ECH