Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03136 ATGGCATGCGGTGTTGTCAAGCGGAGAAGTGCAACGCGGATCTTCATGAGGCCAAGCAGTACCACAGGAGGCACAGGGTGTGTGAAGTATCATGCCAAGGCTCAGGTTGTGCTTGTGGATGGCACCAGACAACGGTTTTGTCAGCAATGTAGCAGATTCCACGAGTTAGCTGAATTTGACGACACAAAAAGAAGTTGCCGCAGGCGTTTGGCTGGACACAATGAACGGAGGAGAAAGAACTCTGATCAGTCTCAAGCAGAAGGGTCAAGCCGCAAAGGGACAGGGCCTCCTCAATTGAAGGACATTGCTTGTGGCCAGGCTGATGAGAGGGGGAGAATTCAGAAAACAATCCAAGAAAAGGCAGCTTACAAACATTTTCAGATAAGATGA 390 0.4949 MACGVVKRRSATRIFMRPSSTTGGTGCVKYHAKAQVVLVDGTRQRFCQQCSRFHELAEFDDTKRSCRRRLAGHNERRRKNSDQSQAEGSSRKGTGPPQLKDIACGQADERGRIQKTIQEKAAYKHFQIR 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03136 129 Gene3D - 25 67 IPR036893 GO:0003677|GO:0005634
Pumo4g03136 129 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 30 98 IPR044817 GO:0003677
Pumo4g03136 129 ProSiteProfiles Zinc finger SBP-type profile. 1 80 IPR004333 GO:0003677
Pumo4g03136 129 Pfam SBP domain 29 79 IPR004333 GO:0003677
Pumo4g03136 129 MobiDBLite consensus disorder prediction 64 110 - -
Pumo4g03136 129 SUPERFAMILY SBT domain 29 83 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03136 Pumo-Chr4 64298296 64300355 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03136 29 129 SBP-box Gene Family AT3G15270 53.922 2.34e-27 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pumo4g03136 SBP 8.7e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03136 - - ccaj:109810441 185.652