Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03135 ATGCCTGCCCAGAAGCGCTCTTTGCCCGAGTCTCTCGACGAAGGGGACACTTCGCAGCACAACCTCTTCCATTCTCGACATGCGAAGCAACAACAACAACAGCAGGACCAGCCGCAGGAACACGACGAGGACCACAACGGAGATGAGCGAGAAGAAGAAGAAGAAGAAGGAGAAGAAGAAGGAGAAGGAGAAGAAGAAGACGAGGAAGAAGAAGAAGAAGTAGAAGAAACGGCGCAACATGACAACAACGACAAGGAAAAACCACAGGATTCCGACGAAACCCCATCTTCTGGCTCTGATGAAAAGCCCGAATTTGTGTATGTAGAACTTCTGGAAATTCGTAAAGATGTCCAATGTCCAATTTGCCTTGGTATTATTAAGAAGACAAGAACCGTTATGGAATGCTTGCACCGTTTTTGCAGGGAATGCATTGACAAATCGATGCGACTAGGGAACAATGAATGCCCTGCTTGCCGCACACATTGCGCCAGTCGTCGTTCCTTGAGAGACGATCCAAATTATGATGCCCTTATTGCTGCTTTATATCCAGATATTGAGAAGTATGAAAAAGAGGAGCTTGAATTTCGTGAAGAGGAGAAGAACCGCAATAAGCTGATTCAAGCTTCAATAGCAAAAGTAGTTCAACGGCAATCTGAAGCATTGGTTAAGAGGCGTAAAGATACACCAGGTGCATTTGTAACAAGATCGCAGCGTAATCAACGAAACATTCATTCTAGGAGACAAACTCAAGCAATTGAAGGATCTGAAGATAACGAGGAGGAAAATGACAATAATGAAAAGGACTCATCTTCAGCTGATGAACGAAGTACAGAACACCGGCAGAGAAGGCGAAAGAGATGGGCTAGAGTTCGCCCCTCTCAACCCTCATCATCCATGGCAAGTCCTGACGGTGGATGCAATGATAGTGATATGGATATAAGTAGAGAAAATCGTGGAATTTCAAGGCAGGTGTCAAAACATGGAAAGCTTACTTGGGGAAGGGGTGGTTTTAGAAGTCACACTCGGCATGGCAGTGGTGGTGGTAGCAATAGCAAAAGTTCTCGCAGTAGTCGATTGTCTAAGTTTGTTGATCATCTCCGAAACTTGGATGAAAACACTAATGAGTTTGATGTCCTTCTCATGCTTGTTTCTCTTGACCAACAAAGTACACCAAGTTTGCAGCAACCTTACCTTTGCTGTCGACCAACTTTGTCTGTCAAGCACGTTTACGAATACGTTGCTCGTCAGACACCTCTGCCAGTTGAAGGAATTGAGATACTGGCAGTCAAAGGATGTTGCAGTACAAACAGCGACAAGTCAGCTGATGAGAATTCTGCCCTGTCATATGATGAGCTATCAACGCTGGTTATAGATCCACACAAAGATGAACTGGAAATTTTGCAAGGACATGAGACTCTGGCAGGGCTTAGATCCAAATGCATATCCAAGATGGGGCATCTGATTATTGCATACAAGCAGAAGGAGGTATCATAG 1494 0.4471 MPAQKRSLPESLDEGDTSQHNLFHSRHAKQQQQQQDQPQEHDEDHNGDEREEEEEEGEEEGEGEEEDEEEEEEVEETAQHDNNDKEKPQDSDETPSSGSDEKPEFVYVELLEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIEKYEKEELEFREEEKNRNKLIQASIAKVVQRQSEALVKRRKDTPGAFVTRSQRNQRNIHSRRQTQAIEGSEDNEEENDNNEKDSSSADERSTEHRQRRRKRWARVRPSQPSSSMASPDGGCNDSDMDISRENRGISRQVSKHGKLTWGRGGFRSHTRHGSGGGSNSKSSRSSRLSKFVDHLRNLDENTNEFDVLLMLVSLDQQSTPSLQQPYLCCRPTLSVKHVYEYVARQTPLPVEGIEILAVKGCCSTNSDKSADENSALSYDELSTLVIDPHKDELEILQGHETLAGLRSKCISKMGHLIIAYKQKEVS 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03135 497 SMART ring_2 119 158 IPR001841 -
Pumo4g03135 497 MobiDBLite consensus disorder prediction 78 102 - -
Pumo4g03135 497 MobiDBLite consensus disorder prediction 9 23 - -
Pumo4g03135 497 Pfam Zinc finger, C3HC4 type (RING finger) 118 158 - -
Pumo4g03135 497 MobiDBLite consensus disorder prediction 343 357 - -
Pumo4g03135 497 MobiDBLite consensus disorder prediction 46 77 - -
Pumo4g03135 497 MobiDBLite consensus disorder prediction 219 357 - -
Pumo4g03135 497 ProSiteProfiles Zinc finger RING-type profile. 119 159 IPR001841 -
Pumo4g03135 497 CDD RING-HC_RING1-like 116 181 - -
Pumo4g03135 497 MobiDBLite consensus disorder prediction 309 323 - -
Pumo4g03135 497 Coils Coil 188 208 - -
Pumo4g03135 497 MobiDBLite consensus disorder prediction 1 102 - -
Pumo4g03135 497 PANTHER OS11G0578200 PROTEIN 31 495 IPR044592 -
Pumo4g03135 497 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 189 IPR013083 -
Pumo4g03135 497 SUPERFAMILY RING/U-box 105 173 - -
Pumo4g03135 497 ProSitePatterns Zinc finger RING-type signature. 135 144 IPR017907 -
Pumo4g03135 497 MobiDBLite consensus disorder prediction 232 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03135 Pumo-Chr4 64279344 64288154 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03135 112 182 C3H Transcription Factor Family AT3G23060 35.135 3.37e-07 50.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03135 4 64279344 64288154 Pumo4g03135 4 64279344 64288154 ECH