Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03134 ATGAGCAGTGTCTGTGCCGAGCAGCACAAGTTTCACCCTTCTCACCAACTCCTTTCTCCAAAGAAAACCCTCAGAGAAATTGACATCCCTCCAAGGAAGCTCCTCACTCGCCGTGCCGCTGTTGCATGCGGCGGCGCCGATGTGTACTCCGACGAGACCATGCTGCAAAAGTTCCTCCCCTCCAACGACTCCGATGAGGACGACCCTTACTCCTCCGACCACTTCCGGATGTTCGAGTTCAAGGTCCGCCGGTGCACTCGAAGCCGGAGTCACGACTGGACCGACTGTCCTTTCGCCCATCCGGGCGAAAAGGCACGTCGCCGTGACCCACGGCGGTACCACTACTCAGGAACAGTCTGTCCTGAGTATCGTCGAGGAGGATGCAGCCGCGGTGATGCATGCGAATACGCCCATGGCGTGTTCGAATGCTGGCTGCATCCTGCCAGGTACAGGACAGAGGCCTGTAAGGATGGCAAGAACTGCAAGAGAAAGGTGTGTTTTTTCGCACACACCCCTCGCCAGCTGAGGATTTTACCGGTAACAGCTTCACCCTCTTCAAATGACATGTCATGCAACAAGAAGAACCTTAACAAACTCTTGAACCATGCTTCAAAATCAAACAACAGCAACAACTGTTGTTTGTTTTGTCATTGTGCTTCCTCTTCAGCTTCTCCAACGTCCACACTCTTTGGCATGTCGCATTTTTCGCCACCACTGTCACCATCATCGTCGTCACCACCACCTTCTCCGTTGAAATCCCGAAACGGGGTTTCTCCTATTTCACCTATTTCCCGTTACAGTGCTGTGAATGTGAACCCTCATCGTGGGGTGGTGAGTTACAAAGACGTGTTCGCTGAGTTTGTGAACTCTTTGGAGGGTTTTAGCTTCAACGAGGGTTCACCTGTTTCCGGTGCAAAAGCACCGAACTTTCCTTGGCTTGATGTTTCTCTGAACTGTGAGGAACAGCAACAACAACAACAACAAAACCCTTTCATTAATGTTTCATCTTTTGGCTGCGAAGATCAGCAGCAACAGTTTATTTTTTCACCACCGTCCACTCAGACACCGACAAATGGGAAGTTTTATTGTAGCAGCAACAAATTCATGGGCAACGACAACAACAAGGTTGTCGGTGCTGCTGACGTTAATGGCCCAGATCTCGCGTGGGTGAACGAGTTGCTGATGTAG 1188 0.5093 MSSVCAEQHKFHPSHQLLSPKKTLREIDIPPRKLLTRRAAVACGGADVYSDETMLQKFLPSNDSDEDDPYSSDHFRMFEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRYHYSGTVCPEYRRGGCSRGDACEYAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHTPRQLRILPVTASPSSNDMSCNKKNLNKLLNHASKSNNSNNCCLFCHCASSSASPTSTLFGMSHFSPPLSPSSSSPPPSPLKSRNGVSPISPISRYSAVNVNPHRGVVSYKDVFAEFVNSLEGFSFNEGSPVSGAKAPNFPWLDVSLNCEEQQQQQQQNPFINVSSFGCEDQQQQFIFSPPSTQTPTNGKFYCSSNKFMGNDNNKVVGAADVNGPDLAWVNELLM 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03134 395 PANTHER UNKEMPT FAMILY MEMBER 51 394 IPR045234 -
Pumo4g03134 395 SMART c3hfinal6 149 172 IPR000571 GO:0046872
Pumo4g03134 395 SMART c3hfinal6 114 140 IPR000571 GO:0046872
Pumo4g03134 395 FunFam Zinc finger CCCH domain-containing protein 66 72 140 - -
Pumo4g03134 395 ProSiteProfiles Zinc finger C3H1-type profile. 115 141 IPR000571 GO:0046872
Pumo4g03134 395 Gene3D - 115 178 - -
Pumo4g03134 395 MobiDBLite consensus disorder prediction 237 257 - -
Pumo4g03134 395 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 119 139 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03134 Pumo-Chr4 64263908 64265388 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03134 70 248 C2H2 Transcription Factor Family AT5G12850 48.649 1.05e-52 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pumo4g03134 zf-CCCH 5.6e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03134 K23047 - gmx:100787049 669.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03134 4 64263908 64265388 Pumo4g03134 4 64263908 64265388 ECH