Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03125 ATGGCTTTGTTATTCAAGGATCCGTCGAAGCTTTCAGCGTATCGAGATAGAAGGTTCCCCGGAACGCAAGAAGACTTTGAGCATGCGCTTCTGGCCTCAACCACCGTTTACGTGGGGAACATGTCGTTTTACACGACGGAGGAGCAAGTTTACGAGCTCTTTTCGCGAGCTGGGGAAATCAAAAAGATCATCATGGGCTTGGATAAGAACACCAAAACGCCCTGCGGTTTCTGTTTCGTTTTATATTATTCTCGTGAAGATACTGAGGATGCTTGCAAATATATAAGTGGGACGATACTGGATGATCGTCCCATTCGAGTTGATTTTGATTGGGGATTTCAGGATGGAAGACAATGGGGGCGTGGTCGGAGTGGTGGCCAGGTCCGTGACGAATATCGCACTGATTACGATCCTGGTAGAGGTGGCTATGGAAAGCTGGTTCAGAAAGAGTTAGAAGTACAAAGGCAGCTTGTAGATTATGGTGCTGGTTCTTTGGGTTCTTTTCCACCAGTTATTCCAACTTCCTATGGTAGACATGGTGGAGGTCATGGACATGGTCATGGTGGTTCTCATCGACATGGTAGAGATTACTATAGGAAGAGACACCGAGATGATGACCGCCACACACATGAGTCCTCAAAAAGAACTTCAGATCATGAATCTCGGAGGAACACTGACCATGAATCTAGACCGGAAAAAAATCCACGGTTTCGTGAGAGTGGTGATTCTGATGATGACGAGGAAGATGATAGAAAAAGACGGGCTTAA 768 0.4622 MALLFKDPSKLSAYRDRRFPGTQEDFEHALLASTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDTEDACKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEVQRQLVDYGAGSLGSFPPVIPTSYGRHGGGHGHGHGGSHRHGRDYYRKRHRDDDRHTHESSKRTSDHESRRNTDHESRPEKNPRFRESGDSDDDEEDDRKRRA 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03125 255 FunFam Nuclear cap-binding protein subunit 2 4 150 - -
Pumo4g03125 255 Gene3D - 5 150 IPR012677 -
Pumo4g03125 255 CDD RRM_NCBP2 36 113 IPR034148 -
Pumo4g03125 255 MobiDBLite consensus disorder prediction 199 255 - -
Pumo4g03125 255 SMART rrm1_1 35 108 IPR000504 GO:0003723
Pumo4g03125 255 MobiDBLite consensus disorder prediction 120 139 - -
Pumo4g03125 255 MobiDBLite consensus disorder prediction 163 255 - -
Pumo4g03125 255 MobiDBLite consensus disorder prediction 124 138 - -
Pumo4g03125 255 MobiDBLite consensus disorder prediction 184 198 - -
Pumo4g03125 255 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
Pumo4g03125 255 SUPERFAMILY RNA-binding domain, RBD 26 144 IPR035979 GO:0003676
Pumo4g03125 255 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
Pumo4g03125 255 PANTHER 20 KD NUCLEAR CAP BINDING PROTEIN 2 253 IPR027157 GO:0000339|GO:0005846|GO:0045292
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03125 Pumo-Chr4 64206213 64209901 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03125 33 109 Eukaryotic Initiation Factors Gene Family AT1G49760 28.571 8.39e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03125 K12883 - gmx:100776217 413.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03125 4 64206213 64209901 Pumo4g03125 4 64206213 64209901 ECH