Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03122 ATGTTGGCGGTGTCACCTTTGAGGAGCACAAGAGATGAAGGGCAAGGGGAGATGGAGAGGTTCTCGATTGGAACCGACGACTTCGCTGACCTTTCAGAAGGGAACTTGCTTGACAGCATCAACTTCGACGATCTCTTCATGGGAATCAATGACGATGAAGATGTCTTGCCGGAACTGGAGATGGACCCTGAAATGCTCGCTGAGTTCTCCCTCAGTGAGGAATTGGAGATAGTCCTCATCAGTTTCACAGCGAATTCTTCTTCAGATTCGGGTTCCAATTCGGGGTCGAGTCGAGGGGAGGAGATACTAAGCAAGAGTGATGAATCAGTGGTGGTGAATCCATCTCCTAAGGAAAGTGAGAAAGGAAGAAAATCATCAACTCAATCAAGGAATAATAATCATCAAGGGAAGAGAAAGGTGAAGGTGGATTGGACCCCAGAATTGCACAGGAGATTTGTTCAAGCAGTGGAGCAGCTTGGAGTGGATAAGGCTGTGCCTTCAAGGATTTTGGAGATTATGGGAATTGACTGCCTCACCCGCCATAACATTGCTAGCCACCTTCAAAAATATAGATCGCATAGGAAGCATTTGCTAGCGCGTGAAGCTGAAGCAGCAAGGTGGACTCAAAGGAAGCAAATGCTGGGTGCAGCAGGTGTAGGTAGAGGAGGAGGCAAGAGAGATGTGAACCCTTGGCTTGCACCAACCATGGGTTTCCCTCCCATGACACCAATGCACCATTTTAGACCTTTACAAGTATGGGGGCATCACACCATGGACCAGTCCTTCATGCACATGTGGCCTAAACATCTACCTTATTCGCCGTCGCCACCGGCTTGGCCGCCACTAACAGCTCCGTCTCCGCCGCCTCCGGACCCTCTATATTGGCACCAACATCGAGGGGCTCCAAACACGCCATCCCCAGGAACACCGTGTTTTCCACAACCTCTGACAACCACGAGATTTGGCTCTCAAACTGTTCCGGGAATCCCACCACACCATGCAATGTACCAAATTGTAGATCCAGGCATTGGCATCCCAGCTAGCCAACCACCACCTCGACCCCTCTTCGACTTTCATCCGTCAAAGGAGAGCGTAGATGCAGCTATTAGTGACGTTTTATTAAAACCATGGTTGCCCCTACCTCTTGGCCTTAAAGCTCCAGCGATTGATGGTGTAATGGGTGAATTACAAAGACAAGGGATTCCCAAAATCCCTCCCTCTTGTGCTTGA 1230 0.4967 MLAVSPLRSTRDEGQGEMERFSIGTDDFADLSEGNLLDSINFDDLFMGINDDEDVLPELEMDPEMLAEFSLSEELEIVLISFTANSSSDSGSNSGSSRGEEILSKSDESVVVNPSPKESEKGRKSSTQSRNNNHQGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAARWTQRKQMLGAAGVGRGGGKRDVNPWLAPTMGFPPMTPMHHFRPLQVWGHHTMDQSFMHMWPKHLPYSPSPPAWPPLTAPSPPPPDPLYWHQHRGAPNTPSPGTPCFPQPLTTTRFGSQTVPGIPPHHAMYQIVDPGIGIPASQPPPRPLFDFHPSKESVDAAISDVLLKPWLPLPLGLKAPAIDGVMGELQRQGIPKIPPSCA 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03122 409 Pfam Myb-like DNA-binding domain 142 191 IPR001005 -
Pumo4g03122 409 MobiDBLite consensus disorder prediction 85 100 - -
Pumo4g03122 409 SUPERFAMILY Homeodomain-like 137 196 IPR009057 -
Pumo4g03122 409 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 136 195 IPR017930 -
Pumo4g03122 409 NCBIfam myb-like DNA-binding domain, SHAQKYF class 139 193 IPR006447 GO:0003677
Pumo4g03122 409 MobiDBLite consensus disorder prediction 85 141 - -
Pumo4g03122 409 PANTHER TRANSCRIPTION ACTIVATOR GLK1 86 408 IPR044825 GO:0003700|GO:0045893
Pumo4g03122 409 FunFam Two-component response regulator 135 198 - -
Pumo4g03122 409 Gene3D - 136 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03122 Pumo-Chr4 64187687 64191456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03122 27 275 G2-like Transcription Factor Family AT5G44190 50.388 3.37e-60 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pumo4g03122 Myb_DNA-binding 5.1e-08 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03122 4 64187687 64191456 Pumo4g03122 4 64187687 64191456 ECH