Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03119 ATGAGTTACTTCGATGATGATCATGATCATGGCCCATTCCACGATCACAACAACGACTTCAACAGAAGGATACTCATCATGGCCATAGTTTCCTTATCAGTGGTCTTGGTTCTCGTCTTTGCACTTCACCTCTATGCAAGGTTCTTCCTCAGGCGCCAAACACGCCGCAGAGCCGCCATATACCAACTAAGCCTCAACGTGGCTCACGCTCACGCCGAGCCACCCAACACAGGACTCGACCCTACCCTCATCACCACTCTCCCCACCTTCCCCTTCAAACAAAACCGCGATTCCGTTGAGTGTGCCGTGTGCTTGAGCGTTCTAGAAGACGGAGAACACGTGAGGCTTCTTCCCAATTGCAAACACAGTTTCCACGTTGGTTGCATCGACACGTGGCTCGCCTCGCACTCCACGTGTCCCATTTGCCGAACCAAGGCCGAACCGGTCCGGCTAGAACCGCAGCCGCGTGAGGGCCCCACTGGTTTGGTTCTTGTCGATGTTGCACCCACGGCTCCGCTATTGTTCGAAAACGTAGAAGGAACCTCGGACGGTGCTAATAACAACGGGTCACCTAAAATTAGTGGTTCGAATTCGAGGTTGAGTTCGTTCCGAAGGATTCTTAGTAGGGAGAGATCTATGAGGAGAATCCAACCCTCTAGCCATGATGATGTTGAACATGATTTAGAAAGGCAGTGA 696 0.5187 MSYFDDDHDHGPFHDHNNDFNRRILIMAIVSLSVVLVLVFALHLYARFFLRRQTRRRAAIYQLSLNVAHAHAEPPNTGLDPTLITTLPTFPFKQNRDSVECAVCLSVLEDGEHVRLLPNCKHSFHVGCIDTWLASHSTCPICRTKAEPVRLEPQPREGPTGLVLVDVAPTAPLLFENVEGTSDGANNNGSPKISGSNSRLSSFRRILSRERSMRRIQPSSHDDVEHDLERQ 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03119 231 SMART ring_2 101 142 IPR001841 -
Pumo4g03119 231 CDD RING-H2_EL5-like 100 143 - -
Pumo4g03119 231 Pfam Ring finger domain 100 143 IPR001841 -
Pumo4g03119 231 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 17 150 - -
Pumo4g03119 231 MobiDBLite consensus disorder prediction 179 231 - -
Pumo4g03119 231 SUPERFAMILY RING/U-box 94 149 - -
Pumo4g03119 231 MobiDBLite consensus disorder prediction 204 231 - -
Pumo4g03119 231 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Pumo4g03119 231 FunFam E3 ubiquitin-protein ligase ATL6 67 149 - -
Pumo4g03119 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 149 IPR013083 -
Pumo4g03119 231 MobiDBLite consensus disorder prediction 180 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03119 Pumo-Chr4 63934038 63935083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03119 1 230 C3H Transcription Factor Family AT2G42360 47.791 6.78e-58 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03119 K19038 - gmx:100780265 342.428