Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03107 ATGGATGATGGAGGAATCTCAAATGCTTTCCCTCACCAGAACCCTTCAACTGCTGCATCTAATAATCAGCCTCCTGTCTTGAAGAGGAAGAGAAACCTCCCTGGAAATCCAGGCAAGGACCAAAACCTTCAACTCCATCGACGAGGGCACAACCTTCCTTGGAAGCTGAAGCAGAGAACAAGCAAAGAAGTGAGGAAGCGAGTTTATGTGTGTCCAGAGAAGACATGTGTCCACAACCACCCTTCAAGGGCTCTGGGAGACTTAACCGGGATAAAGAAGCACTTCTGCAGAAAGCATGGTGAGAAGAAGTGGAAGTGCGAGAAGTGCTCAAAGCGTTATGCTGTGCAGTCAGATTGGAAAGCACACTCAAAAACCTGTGGCACCAGAGAATACAAATGTGACTGTGGCACTATCTTTTCACGGAGGGATAGCTTCATCACTCACAGGGCCTTCTGCGATGCCTTAGCAGAAGAAACAGCTAGGGTGAACGCATCAACAAACATGAGCAGCTACAGCATCATGCAAAATGCCCTTGGTCCTAACATGGCAACCCATTTTTCATCATTTTTCAAGCCAAATTCATGCCCTGAGGAGCCAGCCCCAGGTAACCAAACATCTAATAAGGGCCTATCCCTTTGGATGACTCAAACATCTCAGCCTCATGAGACAATGGCCAACAACAACAACATGCATGAGTTTCATCAACTTGGGTCTGCTACAAGCCCAACAGCAATTTATGGTGGTGGTGGCAATCCACTTGCTTTAGGCTCAAATCCACAACCCTCTAATTACCAGCTAAATTGGGTGTTTGGAAATAAACTCTCCTCCAATGGAAGCCATCAAGAGCTAACTAGCGCTGCTTCACTTCCACTAGTCAACAACATTGTTAAGGATAACCCACACCTGCAACCCATAAGTGTTCCTTCCTTGTATAGCTCACAACACCAATCCCATCAAATAACCTCAGCAAACATGTCAGCCACAGCTTTGTTGCAAAAAGCTGCACAAATTGGGACAACTTCATCGGACCCATCATTATTCCTTGGGAACATAGGTTTGAAATGCAACAGTCCAGGCCAAGATGGGAACAAATTTTGTGGCATGTACGGTTCAAGTTCAGTAATCACAAGTCATGGAAGCGAGGCAGAGAATAATTATTCAGGTGATTTGTCACAAATGCCCCCTACAAAACGACGGCATGTACAGAATGAAGAGAGTGCATGGGGACAAACTAGGGATTTTCTTGGTGTTGGTGGTGCCAACCATTTGCCAACCTTCATCAATCAACGGATGGATTTGATTTGA 1305 0.4567 MDDGGISNAFPHQNPSTAASNNQPPVLKRKRNLPGNPGKDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHNHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVNASTNMSSYSIMQNALGPNMATHFSSFFKPNSCPEEPAPGNQTSNKGLSLWMTQTSQPHETMANNNNMHEFHQLGSATSPTAIYGGGGNPLALGSNPQPSNYQLNWVFGNKLSSNGSHQELTSAASLPLVNNIVKDNPHLQPISVPSLYSSQHQSHQITSANMSATALLQKAAQIGTTSSDPSLFLGNIGLKCNSPGQDGNKFCGMYGSSSVITSHGSEAENNYSGDLSQMPPTKRRHVQNEESAWGQTRDFLGVGGANHLPTFINQRMDLI 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03107 434 Gene3D Classic Zinc Finger 61 152 - -
Pumo4g03107 434 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 39 421 IPR031140 -
Pumo4g03107 434 FunFam protein indeterminate-domain 5, chloroplastic-like 82 161 - -
Pumo4g03107 434 MobiDBLite consensus disorder prediction 1 52 - -
Pumo4g03107 434 MobiDBLite consensus disorder prediction 9 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03107 Pumo-Chr4 63820114 63823214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03107 24 418 IDZ Gene Family AT1G03840 45.824 1.18e-109 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo4g03107 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03107 K25870 - gmx:100778666 783.867