Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03096 ATGAGGAGGTTAAGTTCAAGCTCTGCAAGGGCTAATGACACCATCAAGTTGGATTTGGAGGAGAACAAGATCGTTGATTTCATCAAATTTGATGTTGGGAATGTAGTCATGGTGACAGGTGGAAGGAATAGGGGGCGTGTTGGAGTGATCAAAAACAGGGAGAAGCATAAGGGAAGCTTTGAGACTATCCATGTTCAAGATGCCACTGGGCATGAATTTGCAACTCGTATGGGTAATGTGTTCACTAATGGCAAAGGCAACAAACCATGGGTATCTCTTCCCAAGGGTAAAGGTATTAAGCTATCAATCATTGAGGAAGCTAGGAAAAGGATTCCCGCTCAACAAGCAACTGCAGCTTAA 360 0.4361 MRRLSSSSARANDTIKLDLEENKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRMGNVFTNGKGNKPWVSLPKGKGIKLSIIEEARKRIPAQQATAA 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03096 119 Gene3D - 30 100 IPR014722 -
Pumo4g03096 119 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 8 109 IPR000876 GO:0003735|GO:0005840|GO:0006412
Pumo4g03096 119 SMART kow_9 29 56 IPR005824 -
Pumo4g03096 119 FunFam 40S ribosomal protein S4 30 100 - -
Pumo4g03096 119 Pfam KOW motif 32 65 IPR005824 -
Pumo4g03096 119 CDD KOW_RPS4 30 84 IPR041982 -
Pumo4g03096 119 Pfam 40S ribosomal protein S4 C-terminus 67 112 IPR032277 -
Pumo4g03096 119 Gene3D - 6 27 IPR038237 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03096 Pumo-Chr4 61954394 61955086 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03096 3 116 Cytoplasmic Ribosomal Protein Gene Family AT5G07090 83.333 2.05e-67 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03096 K02987 - gmx:100812132 191.045