Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03074 ATGAAGAATTCCTTGATTATAGCCTTTTCCATAACCATATGCTTCATCGCTTTTGTGATATCGAAGATTGTTATCTCAGTCCTCCTCTACAAAAGATGGAGAAGAAAACATATGATTCATGAAGAAGGTTATCCAGGAGGGAAGATAGTAATATTTAGGTCCTCAGTGCTTAAATCTCTCACAGCTGATGTGATCTTAAAGAAGACACAGAAACTGAACAGCAAGGACATCATTGGATCAGGTGGCTATGGTGTGGTTTATGAACTAAAACTAGATGACTCCACAGCCTTGGCAATAAAAAGACTAAATCGCGGAACTGCAGAGAGAGATAAAGGTTTTGAGAGAGAGTTGGAAGCAATGGCAGACATAAAGCACCGCAACATTGTGACACTTCATGGATATTACACTGCACCACACTACAATCTTCTCATATATGAACTAATGCCCAATGGAAGTTTGGATTCCTTTTTGCATGGGAGATCAAGGGAGAAGAAGGTTTTGGATTGGCCAACCAGATATAGAATAGCTGCAGGTGCAGCTAGAGGAATATCATATCTTCACCATGATTGCATCCCTCACATTATCCACAGAGACATCAAGTCAAGTAACATATTGTTAGATCAAAATATGGATGCCCGAGTTTCTGATTTTGGATTAGCCACGTTGATGCAACCAAATAAAACTCATGTCTCAACAATTGTGGCTGGAACTTTTGGATACTTGCCACCTGAATATTTTGATACAGGAAGAGCAACACTGAAAGGGGATGTTTACAGCTTTGGAGTTGTTTTACTGGAGCTTTTAACTGGGAAAAAACCCAGTGATGAAGCATTTATGGAAGAAGGAACCATGCTTGTCACATGGGTGAAGGCTGTTGTTCGAGACAAGAAGGAGGAGCTAGTTCTTGATAATAGCTTAGGGTCTTGTTCAATGCAAGAGGTCAACAAGGTGTTCAACATTGCAATGATGTGTCTTGAACCAGATCCCTTGAAGAGGCCAACCATGGCTGAAGTTGTCACTTTGCTTGAGCAAACAGAACCAGATAAACTCGTTACTACATCCTGA 1065 0.4056 MKNSLIIAFSITICFIAFVISKIVISVLLYKRWRRKHMIHEEGYPGGKIVIFRSSVLKSLTADVILKKTQKLNSKDIIGSGGYGVVYELKLDDSTALAIKRLNRGTAERDKGFERELEAMADIKHRNIVTLHGYYTAPHYNLLIYELMPNGSLDSFLHGRSREKKVLDWPTRYRIAAGAARGISYLHHDCIPHIIHRDIKSSNILLDQNMDARVSDFGLATLMQPNKTHVSTIVAGTFGYLPPEYFDTGRATLKGDVYSFGVVLLELLTGKKPSDEAFMEEGTMLVTWVKAVVRDKKEELVLDNSLGSCSMQEVNKVFNIAMMCLEPDPLKRPTMAEVVTLLEQTEPDKLVTTS 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03074 354 Pfam Protein kinase domain 74 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g03074 354 Gene3D Transferase(Phosphotransferase) domain 1 148 352 - -
Pumo4g03074 354 Gene3D Phosphorylase Kinase; domain 1 36 147 - -
Pumo4g03074 354 ProSiteProfiles Protein kinase domain profile. 72 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g03074 354 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 7 345 - -
Pumo4g03074 354 FunFam Receptor-like serine/threonine-protein kinase 43 147 - -
Pumo4g03074 354 SUPERFAMILY Protein kinase-like (PK-like) 52 344 IPR011009 -
Pumo4g03074 354 ProSitePatterns Protein kinases ATP-binding region signature. 78 100 IPR017441 GO:0005524
Pumo4g03074 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Pumo4g03074 354 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 148 353 - -
Pumo4g03074 354 SMART serkin_6 72 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03074 Pumo-Chr4 60005091 60008379 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03074 5 344 Receptor kinase-like Gene Family AT2G35620 45.773 3.75e-98 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Pumo4g03074 Pkinase 6.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03074 - - ahf:112703495 578.556