LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo4g03068	ATGCGATTTGTAGGTTACATAGCGCAATGGAGAAGCGCAGCGAAGGAAGCGTTGGATCGCACAGCCATCACTGTGAAATTCCTGTGCTGGCTTCACTTCACCAGCAACTACCTCTGTTCCCCATGTCACGCCTATGGGGTTAGCATGCTCCCCACCCTCAACGTCGCCGGCGACGTCCTTCTCGCCGACCACCTCTCGCCGCGGCTGGGGAACGTCGGCCACGGAGACTTGGTGCTCGTTCGGTCCCCTCTGAACCCTAAGATCAGGCTGACGAAGCGCGTTGTCGCCGTGGAAGGGGACACTGTCACTTACTTTGATCCTTTGCACTCTGAGGCTGCTCAAGTTGCAGTGGTGCCAAAGGGACATGTTTGGATTCAAGGGGATAACATTTATGCTTCCCGTGATTCACGGCATTTTGGTCCTGTTCCATATGGTCTTATACAAGGAAAAGTGTTTTTCCGGGTATGGCCACCTGATAGCTTTGGACCGCTAGGCCAATGA	501	0.5429	MRFVGYIAQWRSAAKEALDRTAITVKFLCWLHFTSNYLCSPCHAYGVSMLPTLNVAGDVLLADHLSPRLGNVGHGDLVLVRSPLNPKIRLTKRVVAVEGDTVTYFDPLHSEAAQVAVVPKGHVWIQGDNIYASRDSRHFGPVPYGLIQGKVFFRVWPPDSFGPLGQ	166

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo4g03068	166	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	118	137	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Pumo4g03068	166	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	37	53	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Pumo4g03068	166	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	90	102	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Pumo4g03068	166	Pfam	Signal peptidase, peptidase S26	114	156	IPR019533	GO:0004252\|GO:0006465
	Pumo4g03068	166	Pfam	Signal peptidase, peptidase S26	25	104	IPR019533	GO:0004252\|GO:0006465
	Pumo4g03068	166	CDD	S26_SPase_I	46	151	IPR019533	GO:0004252\|GO:0006465
	Pumo4g03068	166	SUPERFAMILY	LexA/Signal peptidase	37	164	IPR036286	-
	Pumo4g03068	166	FunFam	Inner membrane protease subunit 1	35	163	-	-
	Pumo4g03068	166	PANTHER	PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED	9	165	-	-
	Pumo4g03068	166	Gene3D	Umud Fragment, subunit A	35	162	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo4g03068	Pumo-Chr4	59912731	59917497	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo4g03068	49	165	MADS-box Gene Family	AT1G29960	53.390	5.11e-40	130

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo4g03068	K09647		-	cave:132173278	260.381