Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03038 ATGGCTTCTACTTTGCTTCCCTTTCTCTTCCTCTCAATGGTTCTGTCACCCTTTCAACCCATCAGTGTTGTAGCCCAAACCAGAAGCAACATAGCCATTGGTGACTCTCACACTGCAGGAACCAGCACCTCCCCATGGTTGGTTTCATCACCTTCTGGTGACTTTGCCTTTGGGTTCCTCCCACTTGAGGACACTCCTCATCATTTCATGCTTTGCATTTGGTATGCTAAGATTCAAGACACTACCATAGTGTGGTTTGCCAATAGAGACAAGCCTGCACCAAAGGACTCAAAAGTGGAGCTCACTGCTGATGATGGGTTGGTGCTCACTGCCCCAAATGGAAACCAGTTATGGAAGACTGGGGGCCTCACTGTGAGAGTTTCTAGTGGTGTGTTTAATGACACTGGCAACTTTGTGCTTCAGGGTGGTGACTCCAACAGTGTTTGGGAGAGTTTCAAGGACTATAGAGACACCTTGCTGCCCTATCAGACAATGGAAAGGGGTCAAAAGCTTTCTTCTAAACTTAGGAGGAATGTTTTCAACAAGGGCAGGTTTGTGCTCTTTTTCCAAAATGATGGTAACCTTGTGATGCACTCTATAAATTTACCATCTGGGTATGCTAATGAAAACTACTATGAAAGTGGAACCATTGGGTCCAACACATCAAGTGCTGGGACTCAATTGGTGTTTGATAGGTCAGGAGACATGTATGTTTTGAGAGAGAACAATGAAAAATACAACTTGTCAAAAGGGGGTAGTAGAGCTTCGACCACTCAATTTTACCTTAGAGCAACTCTTGATTTTGATGGGGTGTTCACACTCTATCAACATCCAAAGGGTTCTTCTGGCAGTGGAGGTTGGACCCCAGTGTGGTCTCATCCAGATAATATCTGTAAGGATTATGTTTCTAGTGCAGGTAGTGGTGTTTGTGGATATAATAGCATTTGCAGTTTAAGAGATGATAAGAGGCCAAATTGTCAGTGTCCAAAATGGTACTCACTGGTTGACCCTAATGATCCCAATGGTAGCTGCAAACCAGATTTTGTACAAGCATGTGTAGTAGATGAGCTTAGTAATAGAAAGGATCTCTATGATTTTGAGGTGTTGATGGATACTGATTGGCCTCTTTCAGATTATGTGCTTCAAAGACCCTTCAATGAAGAGCAATGCAGACAATCTTGTATGGAAGATTGCATGTGTTCTGTTGCCATTTTCAGGCTAGGTGATAGCTGCTGGATGAAGAAGTTGCCACTTTCAAATGGTAGAGTTGATGCCACACTTAATGGTGCAAAGGCCTTCATGAAAGTGAGGAAAGACAACTCCTCCTTGATAGTTCCTCCAATCATTGTGAACAAGAATAATAGGAAAACTTCAATTTTGGTTGGCTCAGTGCTTTTGGGTAGTTCTGCTTTTCTCAACCTCATATTGGTTGGAGTAATCTGCTTTAGCACTTCCTATGTTTTTCGGTACAAGAAGCAGCTTAGAAGTGTTACAAGAAGTGACACTATTGTGGAAACTAACTTGCGTTGCTTCACTTATAAGGAACTCGAAGAAGCCACCAATGGCTTTGACAAAGTGCTAGGAAGGGGAGCTTTTGGTATTGTGTATGAAGGAGTCATCAACAAGGGTTCCGATACTCGTGTGGCGGTTAAAAGGTTGAACACTTTTCTCTTGGAAGAGGTTCAGAAGGAATTCAAGAATGAACTGAATGCCATTGGCCTCACACACCATAAGAACTTGGTCCGTTTACTTGGATTTTGTGAGACTGAAGAAAAAAGGATGCTGGTTTATGAGTACATGAGCAATGGCACTTTAGCAAGTCTTCTTTTCAATGTGGAGAAACCAAGTTGGCAACTAAGGCTACAAATTGCAATTGGGGTTGCTAGAGGACTTCTATACTTGCATGAAGAGTGCAGCACACAGATCATCCATTGTGACATAAAGCCTCAAAACATACTCCTTGATGATTACTATAATGCAAGGATTTCTGACTTTGGATTGGCCAAGCTTTTGAACATGAACCAAAGCAGAACAAACACTGCCATAAGGGGAACAAAAGGGTATGTTGCACTTGAATGGTTCAAAAACATGCCAATCACAGCTAAAGTGGATGTCTATAGTTACGGGGTGCTGTTGCTTGAGATAGTTTCATGCAGAAGAAGTATAGAATTTGAGGCAGAAGATGAAGAGAAAGCAATCCTAGCTGAATGGGCTTATGACTGCTACACTGAAGGTACTCTTCATGCCTTGGTTGAGAATGACAAAGAGGCATTGGATGACATGAAGACCTTGGAGAAATTGGTAATGATTGCCCTTTGGTGTGTGCAAGAGGATCCTGGCCTTAGACCAACTATGAGAAATGTGACACAGATGCTTGAAGGTGTTGTTGAAGTGCAAGTGCCACCATGCCCCTCACAAATTAGTATTCAATATTCCTAA 2439 0.4248 MASTLLPFLFLSMVLSPFQPISVVAQTRSNIAIGDSHTAGTSTSPWLVSSPSGDFAFGFLPLEDTPHHFMLCIWYAKIQDTTIVWFANRDKPAPKDSKVELTADDGLVLTAPNGNQLWKTGGLTVRVSSGVFNDTGNFVLQGGDSNSVWESFKDYRDTLLPYQTMERGQKLSSKLRRNVFNKGRFVLFFQNDGNLVMHSINLPSGYANENYYESGTIGSNTSSAGTQLVFDRSGDMYVLRENNEKYNLSKGGSRASTTQFYLRATLDFDGVFTLYQHPKGSSGSGGWTPVWSHPDNICKDYVSSAGSGVCGYNSICSLRDDKRPNCQCPKWYSLVDPNDPNGSCKPDFVQACVVDELSNRKDLYDFEVLMDTDWPLSDYVLQRPFNEEQCRQSCMEDCMCSVAIFRLGDSCWMKKLPLSNGRVDATLNGAKAFMKVRKDNSSLIVPPIIVNKNNRKTSILVGSVLLGSSAFLNLILVGVICFSTSYVFRYKKQLRSVTRSDTIVETNLRCFTYKELEEATNGFDKVLGRGAFGIVYEGVINKGSDTRVAVKRLNTFLLEEVQKEFKNELNAIGLTHHKNLVRLLGFCETEEKRMLVYEYMSNGTLASLLFNVEKPSWQLRLQIAIGVARGLLYLHEECSTQIIHCDIKPQNILLDDYYNARISDFGLAKLLNMNQSRTNTAIRGTKGYVALEWFKNMPITAKVDVYSYGVLLLEIVSCRRSIEFEAEDEEKAILAEWAYDCYTEGTLHALVENDKEALDDMKTLEKLVMIALWCVQEDPGLRPTMRNVTQMLEGVVEVQVPPCPSQISIQYS 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03038 812 Pfam Protein tyrosine and serine/threonine kinase 523 792 IPR001245 GO:0004672|GO:0006468
Pumo4g03038 812 SMART serkin_6 521 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g03038 812 PIRSF SRK 1 812 IPR024171 GO:0004674
Pumo4g03038 812 FunFam S-receptor-like serine/threonine-protein kinase 490 599 - -
Pumo4g03038 812 Gene3D - 155 282 IPR036426 -
Pumo4g03038 812 SMART blect_4 39 156 IPR001480 -
Pumo4g03038 812 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 600 800 - -
Pumo4g03038 812 Pfam D-mannose binding lectin 82 169 IPR001480 -
Pumo4g03038 812 ProSiteProfiles Bulb-type lectin domain profile. 34 153 IPR001480 -
Pumo4g03038 812 CDD B_lectin 47 152 IPR001480 -
Pumo4g03038 812 ProSiteProfiles Protein kinase domain profile. 521 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g03038 812 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 25 153 - -
Pumo4g03038 812 ProSitePatterns Protein kinases ATP-binding region signature. 527 551 IPR017441 GO:0005524
Pumo4g03038 812 Gene3D Phosphorylase Kinase; domain 1 495 599 - -
Pumo4g03038 812 SUPERFAMILY alpha-D-mannose-specific plant lectins 69 216 IPR036426 -
Pumo4g03038 812 SUPERFAMILY Protein kinase-like (PK-like) 502 793 IPR011009 -
Pumo4g03038 812 ProSitePatterns Serine/Threonine protein kinases active-site signature. 642 654 IPR008271 GO:0004672|GO:0006468
Pumo4g03038 812 Gene3D Transferase(Phosphotransferase) domain 1 600 801 - -
Pumo4g03038 812 Gene3D - 23 154 IPR036426 -
Pumo4g03038 812 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 38 804 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03038 Pumo-Chr4 58787715 58790153 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03038 507 804 Receptor kinase-like Gene Family AT1G60800 41.640 1.14e-73 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Pumo4g03038 PK_Tyr_Ser-Thr 2.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03038 - - gmx:100815462 1514.59