Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03028 ATGAGGGTCAGGATTACACTTGCTGAAAAGGGTATCAAGTATGAGTCCAGAGAAGAGGACTTGAGGAACAAGAGTCCTCTGCTCCTCCAAATGAACCCGGTTCACATGAAAATCCCGGTTCTGATCCACAATGGCAAACCCATTTGTGAATCCCTCATTGCTGTTCAGTATATTGAGGATGTTTGGAGTGACAGAAACCCCTTGTTGCCTTCTGACCCTTACCAGAGAGCTCAGGCTAGATTCTGGGCTGACTATGTTGACAAGAAGATGTATGATAGTGGAAGTAAGATTTGGACATCAAAGGGAGAAGAAATAGAAACTGCCAAGAAGGAGTTCATAGAAGCCCTTCAATTGTTGGAGGAACAGCTGGGAGACAAGACTTATTTTGGAGGAGACAATCTTGGTTTTGTGGACATAGCACTTGTTCCATTCTACACTTCGTTCAAAGCCTATGAGACTTTCTGCACCCTCAACATAGAGAGCCTTAGCCTTCTTTTGCACTACGAATCACTTTTGTACTTGAATCTTCTTCATCCTTCTCTGTTCTGCTTGAACTCAACCATGGCAGATGAGGTGGTTCTGCTAGATTTCTGGCCTAGTCCATTTGGGATGAGGGTCAGGATTGCACTTGCTGAAAAGGGTATCAAATATGAGTACAAAGAAGAGGACTTGAGGAACAAGAGCCCTCTACTCCTCCAAATGAACCCGGTTCACAAGAAAATCCCGGTTTTCATCCACAATGGCAAGCCTATTTGTGAATCCCTCATTGCTGTTACGTACATTGAGGAGGTTTGGAATGACAGAAACCCCTTGTTGCCTTCTGACCCTTACCAGAGAGCTCAGGCTAGATTCTGGGCTGATTATGTTGACAAGAAGATATATGATCTTGGTAGGAAGATTTGGACATCAAAAGGAGAAGAAAAAGAAGCTGCCAAGAAGGAGTTCATTGAAGCCCTTAAATTGTTGGAGGAACAGCTGGGAGACAAGACTTATTTTGGAGGAGACAATCTTGGTTTTGTGGATATAGCACTTGTTCCATTCTACACTTGGTTCAAAGCCTATGAGACTTTTGGCACCCTCAACATAGAGAGTGAGTGCCCCAAGTTTATTGCTTGGGTAAAGAGGTGCCTGCAGAAAGACAGCGTTGCCAAGTCTCTTCCTGATCAGCATAAGGTCTATGAATTCATTATGGACCTAAGAAAGAAGTTAGGCATTGAGCATGCAAGCTTCTCATCATTGGACATGATAACCTTCACTTCAAATTTGAGTATACACCAATACCAAAAGTGTAGTGTATCTTCTGATGACACATTAGTTTTCTCTCGTTGGAGTCTTCTTTCTCAAGTCTCAGCAATGGAAGATGAGGTGATTCTGTTGAATTTCTGGTTAAGCCCTTATGGGGTGAGGGTCCGGATTGCACTAGAGGAAAAGGGCATCAAGTATGAGAATAGAGAGGAGGACTTAACTAACAAGAGCCCTTTACTCCTGCAAATGAACCCAGTTCATAAGAAAATACCAGTTCTCATCCACAATGGCAAACCCATCTGTGAGTCACTCATTATTGTTGAGTATATTGACGAGGTTTGGAATGATCAATCTCCCCTGTTGCCATCTGATCCTTACCAGAGATCCCAAGCTAGATTCTGGGCTAACTATGTTGACACCAAGATGTATGAGATTGCCTTGAAGTTTTGGACAACTGAAGGGGTAGAGAAAGAAGCTGCGAAGGAAGAATTTTTGGAGTGTCTGAAGTTATTCGAAGAACAACTGGGGGACAAGCCTTATCTTGGTGGAGACAACTTTGGTCTTGTGGATGTTGCACTTGTTCCATTGATCTGCTATTTTTATGTCTATAATTTATATGGGGATTTCATTAACGAGGCACAGTACCCCCAAATCATTGCTTGGGCTAATAGGTGCACTCAAAAAGAGAGTGTGTCCAAGTGTTTGCCCGAGGAGCAGAGGGTCAAAGAGTTTGTTTCGCAGAAGAAAAAGAATTTGAACCGTGAGTAG 2013 0.4302 MRVRITLAEKGIKYESREEDLRNKSPLLLQMNPVHMKIPVLIHNGKPICESLIAVQYIEDVWSDRNPLLPSDPYQRAQARFWADYVDKKMYDSGSKIWTSKGEEIETAKKEFIEALQLLEEQLGDKTYFGGDNLGFVDIALVPFYTSFKAYETFCTLNIESLSLLLHYESLLYLNLLHPSLFCLNSTMADEVVLLDFWPSPFGMRVRIALAEKGIKYEYKEEDLRNKSPLLLQMNPVHKKIPVFIHNGKPICESLIAVTYIEEVWNDRNPLLPSDPYQRAQARFWADYVDKKIYDLGRKIWTSKGEEKEAAKKEFIEALKLLEEQLGDKTYFGGDNLGFVDIALVPFYTWFKAYETFGTLNIESECPKFIAWVKRCLQKDSVAKSLPDQHKVYEFIMDLRKKLGIEHASFSSLDMITFTSNLSIHQYQKCSVSSDDTLVFSRWSLLSQVSAMEDEVILLNFWLSPYGVRVRIALEEKGIKYENREEDLTNKSPLLLQMNPVHKKIPVLIHNGKPICESLIIVEYIDEVWNDQSPLLPSDPYQRSQARFWANYVDTKMYEIALKFWTTEGVEKEAAKEEFLECLKLFEEQLGDKPYLGGDNFGLVDVALVPLICYFYVYNLYGDFINEAQYPQIIAWANRCTQKESVSKCLPEEQRVKEFVSQKKKNLNRE 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03028 670 CDD GST_N_Tau 1 62 - -
Pumo4g03028 670 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 539 659 IPR010987 -
Pumo4g03028 670 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 195 395 IPR045073 -
Pumo4g03028 670 Gene3D - 275 406 - -
Pumo4g03028 670 Gene3D - 72 169 - -
Pumo4g03028 670 SFLD Main (cytGST) 1 159 - -
Pumo4g03028 670 SFLD Main.3: Omega- and Tau-like 452 667 IPR045073 -
Pumo4g03028 670 SFLD Main.3: Omega- and Tau-like 1 159 IPR045073 -
Pumo4g03028 670 SFLD Main.3: Omega- and Tau-like 188 406 IPR045073 -
Pumo4g03028 670 CDD GST_N_Tau 192 265 - -
Pumo4g03028 670 FunFam Glutathione S-transferase U20 539 670 - -
Pumo4g03028 670 SFLD Glutathione Transferase (cytosolic) 452 667 IPR040079 -
Pumo4g03028 670 SFLD Glutathione Transferase (cytosolic) 188 406 IPR040079 -
Pumo4g03028 670 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 275 395 IPR010987 -
Pumo4g03028 670 FunFam Tau class glutathione S-transferase 187 274 - -
Pumo4g03028 670 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 454 533 IPR004045 -
Pumo4g03028 670 SUPERFAMILY Thioredoxin-like 1 90 IPR036249 -
Pumo4g03028 670 CDD GST_C_Tau 276 399 IPR045074 GO:0004364|GO:0006749
Pumo4g03028 670 Pfam Glutathione S-transferase, C-terminal domain 104 151 - -
Pumo4g03028 670 Pfam Glutathione S-transferase, C-terminal domain 307 375 - -
Pumo4g03028 670 Pfam Glutathione S-transferase, C-terminal domain 571 639 - -
Pumo4g03028 670 Pfam Glutathione S-transferase, N-terminal domain 456 527 IPR004045 -
Pumo4g03028 670 Pfam Glutathione S-transferase, N-terminal domain 193 262 IPR004045 -
Pumo4g03028 670 Pfam Glutathione S-transferase, N-terminal domain 1 59 IPR004045 -
Pumo4g03028 670 SUPERFAMILY GST C-terminal domain-like 60 161 IPR036282 -
Pumo4g03028 670 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 66 IPR004045 -
Pumo4g03028 670 SUPERFAMILY GST C-terminal domain-like 263 403 IPR036282 -
Pumo4g03028 670 SUPERFAMILY Thioredoxin-like 456 557 IPR036249 -
Pumo4g03028 670 Gene3D - 539 670 - -
Pumo4g03028 670 FunFam Glutathione S-transferase U20 275 406 - -
Pumo4g03028 670 FunFam Tau class glutathione S-transferase 450 538 - -
Pumo4g03028 670 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 190 269 IPR004045 -
Pumo4g03028 670 Gene3D Glutaredoxin 452 538 - -
Pumo4g03028 670 Gene3D Glutaredoxin 1 71 - -
Pumo4g03028 670 Gene3D Glutaredoxin 188 274 - -
Pumo4g03028 670 Coils Coil 102 122 - -
Pumo4g03028 670 CDD GST_N_Tau 456 529 - -
Pumo4g03028 670 Coils Coil 305 325 - -
Pumo4g03028 670 CDD GST_C_Tau 540 662 IPR045074 GO:0004364|GO:0006749
Pumo4g03028 670 CDD GST_C_Tau 73 154 IPR045074 GO:0004364|GO:0006749
Pumo4g03028 670 SUPERFAMILY Thioredoxin-like 192 293 IPR036249 -
Pumo4g03028 670 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 72 202 IPR010987 -
Pumo4g03028 670 SUPERFAMILY GST C-terminal domain-like 527 664 IPR036282 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03028 Pumo-Chr4 58686105 58692295 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03028 452 667 Glutathione S-transferase Gene Family AT1G78380 57.407 8.02e-90 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03028 K00799 - gmx:547520 426.787