Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03021 ATGATGGCATTGGAGTGTAGTTTCCACTTCCTAAATGGGGTTTACATGGTGCTATTGTTTTGCCTTGGCATTGTCCTTGTGAATTCGGTTAATGAAGAGGGTTTGAGTCTTTTGAGGTTCAAAGCTTCCCTTCTTGACCCAAACAACAATCTCTATAACTGGGATTCTTCTGATTTGACTCCTTGCAAATGGACTGGTGTGTATTGCACAGGTTCAGTGGTAACTTCTGTGAAACTTTACCAACTCAATCTGTCTGGTACTTTGGCACCTACCATCTGTAATCTTCCAAAGCTGCTTGAGTTGAATTTGTCAAAAAATTTCTTCTCTGGCCCCATTCCTGATGGTTTTGTTGACTGTGGTGGTTTGGAGGTTTTGGACCTTTGCACAAATAGGCTCCATGGACCCCTTCTGACCCCAATTTGGAAAATTACAACACTTAGAAAGCTTTACTTGTGTGAAAATTACATGTATGGTGAAGTGCCCGTGGAGCTTGGGAATTTGGTATCACTTGAGGAGCTGGTCATATATAGCAATAATTTAACTGGAAGAATTCCCTCATCAATAAGAAGGTTGAAGCAGCTTAGAGTTATAAGGGCAGGTCTGAATGCCCTCTCAGGGCCAATACCTGCTGAAATTAGTGAGTGTGAAAGCTTGGAGATATTGGGGTTGGCACAGAATCAGCTAGAAGGTTCCATTCCAAGGGAGCTTGAAAAGCTTCAGAACCTCACCACTATACTTCTATGGCAAAACTCTTTCTCTGGGGAGATTCCTCCTGAGATTGGAAACATTAGTAGCTTGGAACTGCTTGCTTTGCACCAAAATTCACTAATTGGTGGTGTCCCCAGGGAACTGGGAAAGCTGTCCCGGCTGAAGAGGTTGTACATGTACACCAACATGTTGAATGAAACAATTCCACCAGAGCTAGGGAATTGCACAAATGCTATTGAGATAGACCTTTCTGAGAACCATTTGATTGGGACCATTCCCAAGGAGTTGGGCCTGATCTCTAATCTTAGCTTGCTTCATCTGTTTGAAAACAATCTGCAGGGTCATATTCCAAGGGAGCTTGGTCAGTTGAGGGTGCTAAGAAATTTAGACCTGTCATTGAATAACTTGACAGGCACAATTCCACTGGAGTTTCAAAACCTAACATTCATGGAGGATTTGCAGCTGTTTGACAATCAACTTGAGGGTCTGATTCCTCCTCATCTTGGAGCTATTAGAAACCTTACTATTCTTGATATATCTGCAAACAACCTTGTTGGTATGATACCTGTCAATCTTTGTGGATATCAGCAGCTGCAATTCCTGAGCCTTGGTTCAAATCGGTTGTTTGGAAATATTCCTTATAGCCTCAAAACATGCAAATCTCTTGTGCAGCTTATGCTAGGGGACAACCTGTTGACAGGAAGCCTACCTGTGGAATTGTATGAGCTTCACAATCTCACTGCACTTGAACTCTATCAGAACCAATTTTCGGGGATAATAAACCCAGGGATAGGCCAACTCAGGAATCTAGAGAGGCTTCTCTTGTCAGCTAACTACTTTGAAGGCTATCTCCCACCTGAGATTGGAAATTTGGCACAACTTGTCACATTCAATGTTTCCTCTAACCGTTTCAGTGGAAGTATACCTCATGAGTTGGGAAACTGTACAAGACTGCAGAGGCTTGATCTTAGCAGGAACCACTTCGCTGGCATGCTTCCAAATGAAACTGGCAACTTGGTGAACTTGGAGCTGTTGAAAGTTTCTGATAACATGCTCTCAGGAGAAATACCAGGCACTTTGGGGAACCTTATTCGGCTCACAGACCTGCAACTAGGTGGCAACCAGTTTTCAGGAAGCATCTCTTTTCACTTGGGAAGACTTGGAGCTCTTCAGATTGCACTTAATCTGAGCCACAACAAACTTTCTGGCCCAATTCCTGGTAGCCTTGGGAACTTGCAAATGCTAGAGTCCCTTTATCTAAATGACAATGAACTTGTTGGTGAGATTCCTGCATCAATAGGTAACCTTCTCAGTCTTGTAATATGCAATGTATCTAACAACAAGCTGGTAGGAACTGTTCCAGACACCACTACATTTAGAAAGATGGATTTCACAAACTTTGCTGGGAACAACGGCTTGTGCCGTGTCGGTACCAATCACTGCCATCCATCTCTATCTCCCTCTCATGCTGCAAAACATAGCTGGATCAGAAATGGTTCATCAAGGGAAAAGATAGTGAGCATTGTTTCTGGGGTGGTTGGACTAGTTTCTCTTATTTTCATAGTGTGCATATGTTTGGCCATGAGGCGCCGTAGCCATGCTGCTTTTGTTTCACTTGAAGGACAAACAAAGACTCATGTCTTGGATAACTACTACTTTCCTAAGGAAGGCTTTACATACCAGGATCTCTTGGAAGCCACTGGCAATTTTTCAGAAACAGCAGTTCTAGGAAGAGGAGCATGTGGCACTGTTTACAAGGCTGTTATGAGTGATGGTGAAGTGATTGCTGTTAAGAAGCTGAATTCGCGTGGAGAAGGAGCAAATAATGTTGACAGAAGCTTCCTTGCTGAGATTTCAACTCTTGGAAAGATCAGGCACAGGAACATTGTGAAGCTGTATGGATTTTGCTACCATGAGGATTCTAATCTTCTCTTGTATGAATACATGGAAAATGGAAGCCTCGGGGAACAACTTCATTCAAGTGCAACCACATGTGCATTGGATTGGGGTAGTAGATATAAAATTGCTCTTGGAGCAGCTGAAGGCTTATGCTATCTTCATTATGATTGCAAGCCTCATATCATCCATCGTGATATAAAGTCAAACAACATATTACTTGATGAGGTGTTTCAGGCTCATGTTGGAGACTTTGGCTTGGCTAAGTTGATTGATTTTTCCTACTCAAAATCCATGTCTGCCGTGGCAGGTTCATATGGCTACATTGCCCCAGAATATGCTTACACCATGAAGGTGACTGAGAAGTGTGACATCTATAGCTTTGGGGTAGTTTTGCTTGAACTAGTTACTGGGAGGTCACCTGTTCAACCTTTGGAACAAGGTGGTGACCTAGTAACTTGTGTGAGAAGAGCAATTCAAGCATCAGTACCAACATCTGAATTATTTGACAAGAGATTGAATCTTAGTGCACCAAAGACAGTTGAAGAAATGTCTCTTATTCTCAAAATTGCCCTGTTCTGCACCAGCACATCTCCATTAAATAGGCCTACAATGAGAGAGGTCATTGCAATGTTGATTGATGCTAGGGAATATGTCAGCAATTCACCTTCCTCTCCTACATCAGAATCTCCATTGGATGAGGATGACGGCATTTCTTCCAAAGATGGTGGTCTTGAGTTGTAA 3348 0.4265 MMALECSFHFLNGVYMVLLFCLGIVLVNSVNEEGLSLLRFKASLLDPNNNLYNWDSSDLTPCKWTGVYCTGSVVTSVKLYQLNLSGTLAPTICNLPKLLELNLSKNFFSGPIPDGFVDCGGLEVLDLCTNRLHGPLLTPIWKITTLRKLYLCENYMYGEVPVELGNLVSLEELVIYSNNLTGRIPSSIRRLKQLRVIRAGLNALSGPIPAEISECESLEILGLAQNQLEGSIPRELEKLQNLTTILLWQNSFSGEIPPEIGNISSLELLALHQNSLIGGVPRELGKLSRLKRLYMYTNMLNETIPPELGNCTNAIEIDLSENHLIGTIPKELGLISNLSLLHLFENNLQGHIPRELGQLRVLRNLDLSLNNLTGTIPLEFQNLTFMEDLQLFDNQLEGLIPPHLGAIRNLTILDISANNLVGMIPVNLCGYQQLQFLSLGSNRLFGNIPYSLKTCKSLVQLMLGDNLLTGSLPVELYELHNLTALELYQNQFSGIINPGIGQLRNLERLLLSANYFEGYLPPEIGNLAQLVTFNVSSNRFSGSIPHELGNCTRLQRLDLSRNHFAGMLPNETGNLVNLELLKVSDNMLSGEIPGTLGNLIRLTDLQLGGNQFSGSISFHLGRLGALQIALNLSHNKLSGPIPGSLGNLQMLESLYLNDNELVGEIPASIGNLLSLVICNVSNNKLVGTVPDTTTFRKMDFTNFAGNNGLCRVGTNHCHPSLSPSHAAKHSWIRNGSSREKIVSIVSGVVGLVSLIFIVCICLAMRRRSHAAFVSLEGQTKTHVLDNYYFPKEGFTYQDLLEATGNFSETAVLGRGACGTVYKAVMSDGEVIAVKKLNSRGEGANNVDRSFLAEISTLGKIRHRNIVKLYGFCYHEDSNLLLYEYMENGSLGEQLHSSATTCALDWGSRYKIALGAAEGLCYLHYDCKPHIIHRDIKSNNILLDEVFQAHVGDFGLAKLIDFSYSKSMSAVAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELVTGRSPVQPLEQGGDLVTCVRRAIQASVPTSELFDKRLNLSAPKTVEEMSLILKIALFCTSTSPLNRPTMREVIAMLIDAREYVSNSPSSPTSESPLDEDDGISSKDGGLEL 1115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03021 1115 SUPERFAMILY Protein kinase-like (PK-like) 783 1080 IPR011009 -
Pumo4g03021 1115 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 771 884 - -
Pumo4g03021 1115 ProSitePatterns Serine/Threonine protein kinases active-site signature. 930 942 IPR008271 GO:0004672|GO:0006468
Pumo4g03021 1115 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 412 1081 - -
Pumo4g03021 1115 Gene3D Ribonuclease Inhibitor 35 140 IPR032675 -
Pumo4g03021 1115 Gene3D Ribonuclease Inhibitor 335 408 IPR032675 -
Pumo4g03021 1115 Gene3D Ribonuclease Inhibitor 141 233 IPR032675 -
Pumo4g03021 1115 MobiDBLite consensus disorder prediction 1087 1115 - -
Pumo4g03021 1115 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Pumo4g03021 1115 SUPERFAMILY RNI-like 364 687 - -
Pumo4g03021 1115 Gene3D Transferase(Phosphotransferase) domain 1 885 1098 - -
Pumo4g03021 1115 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase isoform B 182 280 - -
Pumo4g03021 1115 MobiDBLite consensus disorder prediction 1087 1101 - -
Pumo4g03021 1115 SUPERFAMILY L domain-like 56 465 - -
Pumo4g03021 1115 Gene3D Ribonuclease Inhibitor 234 331 IPR032675 -
Pumo4g03021 1115 Pfam Protein kinase domain 807 1077 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g03021 1115 Gene3D Ribonuclease Inhibitor 409 721 IPR032675 -
Pumo4g03021 1115 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase isoform B 30 181 - -
Pumo4g03021 1115 ProSiteProfiles Protein kinase domain profile. 806 1087 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g03021 1115 SMART LRR_typ_2 479 503 IPR003591 -
Pumo4g03021 1115 SMART LRR_typ_2 648 672 IPR003591 -
Pumo4g03021 1115 SMART LRR_typ_2 359 382 IPR003591 -
Pumo4g03021 1115 SMART LRR_typ_2 527 551 IPR003591 -
Pumo4g03021 1115 SMART LRR_typ_2 287 311 IPR003591 -
Pumo4g03021 1115 SMART LRR_typ_2 167 191 IPR003591 -
Pumo4g03021 1115 SMART LRR_typ_2 407 431 IPR003591 -
Pumo4g03021 1115 SMART LRR_typ_2 575 599 IPR003591 -
Pumo4g03021 1115 SMART LRR_typ_2 552 574 IPR003591 -
Pumo4g03021 1115 SMART LRR_typ_2 95 119 IPR003591 -
Pumo4g03021 1115 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 409 721 - -
Pumo4g03021 1115 Gene3D Phosphorylase Kinase; domain 1 769 884 - -
Pumo4g03021 1115 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 885 1097 - -
Pumo4g03021 1115 SMART serkin_6 806 1087 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g03021 1115 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase isoform B 281 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03021 Pumo-Chr4 58612444 58618084 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03021 52 1084 Receptor kinase-like Gene Family AT1G73080 37.291 0.0 615
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pumo4g03021 Pkinase 9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03021 - - gmx:100818311 2092.39