Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03020 ATGGACGAACCCACGTTGTTGTTCCCCGACGCAGACCTCGATCTCAGCTTCACCAGCACCACCACCGACCGCACCACCACCACCACCACCACCAGCGCCAGAACCAGCTTAACCCGCACCAGCAGCCTCACCCTCAGCTTCAACGACCGCCTCTCCACATTCTCCGCCGCCGAAAACACCACAGCCGCAGTCGTCAACCGCCGCCCTCACCGGAGCTCCGACCCGAACTGGTCCGCCATCCAGGCCGCCGTGAACCTCTCCTCCGACGGCCGCCTCCACCTCCGCCACCTGAAGCTCCTCCGCCACCTCGGCTCCGGCAACCTCGGCCGCGTCTTCCTCTGCCGCCTCCGCGACTGCGACGGCGGCGCCCACTTCGCCCTCAAAGTCGTCGACAAGGACCTCCTCACCCCGAAAAAACTCTCCCACGCGCAAACCGAGGCCGAGATCCTCCACGCGCTCGACCACCCCTTCCTCCCCACGCTCTACGCGCGCATCGACGTGTCGCACTACACGTGCCTCCTCATCGACTTCTGCCCTAACGGCGACCTCCACTCCCTCCTCCGCAAGCAGCCCCAACACCGCCTCCCCCTCGCGGCGGCGCGTTTCTTCGCCGCCGAGATCCTCCTCGCCCTCGAGTACCTCCACGCACTCGGCTTCGTCTACCGCGACCTCAAACCCGAAAACGTCCTCTTACGCGAAGACGGCCACGTCATGCTCTCGGATTTCGATCTATGCTTCAAATCCGACGTGGCACCAAGTCTCAACTTCCGGGCCCACACCCCATCCCGCGTGGACCCCACAAACGGTTGTTTCAGTTATAACCGTCGTCACCGATCTCGAGAGAAGTTAGTTGCAGAGTTCGTGGCGGAACCGGTAACGGCGTTTTCTCGGTCGTGCGTTGGAACACACGAGTACTTAGCTCCCGAGCTCGTCTCCGGTAACGGTCACGGTAACGGCGTGGACTGGTGGGCTTTTGGGATTTTCGTTTACGAATTACTGTACGGGACGACGCCGTTTAAGGGGTGTACTAAAGAGGACACGCTGCGCAATATAGCGTCGAGCAAGGACGTGAGGTTCGTCCACGTGGCGGAACGAGAGGAACCCGGAATGGCTGAAGCTAGAGATTTGATTGAGAAGCTGTTGGTGAAGGACCCTAGGAAGAGGCTAGGGTGCGCCAAGGGCGCTACCGAGATTAAACGACACGCGTTTTTCGATGGGATTAAGTGGCCTTTGATTAGGACTTACCGGCCACCGGAAGTGAAGGGGTTGATGAGAAGAAACAAGTCGCACGTGAGTGGTCACGTGAGTTGCAAGAGAAAGAGGGGGTGGTGGAAGAGACTTGGGCATGCTGTGAGGAGCAAAGGGGGTAAATATAATTTGTTTTCAAACTATAGTAATAGTAATAATTATTATCATTATGTTGATGATGGTTATAAGGATAGGTAG 1446 0.5837 MDEPTLLFPDADLDLSFTSTTTDRTTTTTTTSARTSLTRTSSLTLSFNDRLSTFSAAENTTAAVVNRRPHRSSDPNWSAIQAAVNLSSDGRLHLRHLKLLRHLGSGNLGRVFLCRLRDCDGGAHFALKVVDKDLLTPKKLSHAQTEAEILHALDHPFLPTLYARIDVSHYTCLLIDFCPNGDLHSLLRKQPQHRLPLAAARFFAAEILLALEYLHALGFVYRDLKPENVLLREDGHVMLSDFDLCFKSDVAPSLNFRAHTPSRVDPTNGCFSYNRRHRSREKLVAEFVAEPVTAFSRSCVGTHEYLAPELVSGNGHGNGVDWWAFGIFVYELLYGTTPFKGCTKEDTLRNIASSKDVRFVHVAEREEPGMAEARDLIEKLLVKDPRKRLGCAKGATEIKRHAFFDGIKWPLIRTYRPPEVKGLMRRNKSHVSGHVSCKRKRGWWKRLGHAVRSKGGKYNLFSNYSNSNNYYHYVDDGYKDR 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03020 481 Gene3D Transferase(Phosphotransferase) domain 1 182 248 - -
Pumo4g03020 481 SUPERFAMILY Protein kinase-like (PK-like) 73 420 IPR011009 -
Pumo4g03020 481 PANTHER FLIPPASE KINASE 1-RELATED 25 422 - -
Pumo4g03020 481 SMART serkin_6 97 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g03020 481 FunFam Serine/threonine-protein kinase WAG2 96 181 - -
Pumo4g03020 481 CDD STKc_phototropin_like 104 420 - -
Pumo4g03020 481 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Pumo4g03020 481 FunFam Serine/threonine-protein kinase OXI1 294 422 - -
Pumo4g03020 481 Gene3D Transferase(Phosphotransferase) domain 1 296 418 - -
Pumo4g03020 481 Pfam Protein kinase domain 99 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g03020 481 ProSiteProfiles Protein kinase domain profile. 97 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g03020 481 FunFam Serine/threonine-protein kinase OXI1 182 249 - -
Pumo4g03020 481 Gene3D Phosphorylase Kinase; domain 1 96 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03020 Pumo-Chr4 58597930 58599508 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03020 8 474 AGC Kinase Gene Family AT1G53700 64.632 0.0 588
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Pumo4g03020 Pkinase 1.6e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03020 - - gmx:100778383 748.043