Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03018 ATGTTAATTTTGGTGGGGAACGTGCAGGGAACAATGAGTTCTCTTGCTTCTCCAGTGAGTTTGGGGAGCCTCATGGGTGTGAGTTCCTCTGGAAGGTCCCATTCTGTGGTGAGAAGAGTCTCTCTTACAAGAGGGAACTGTAGGGGGAGAAAGAGATGGCATTGTGTGTCATTGTCTGTGTGTAGATATTCAGTGACCACAACTGATTTTGTTGCTGACCAAGGGAATTCAGTGTCCCTTGATTCTAACAGTAGTGGTAGTAGTAAGGGTGGAGATGATGGTGCTGGTTTTGTGCTTAAGCCTCCTCCTAAGCCTGTATTGAAGTCCCCAGAAAATAAGGGTGACCCCATTTTGGGGCCCCCAAGGACTACTGGGGACGAAGAGAGGAATAAGGTGATTGAATCACTTGGGGAGGTGTTGGAGAAGGCGGAAAAGCTGGGGAGTTCTAAGGTGAATGGTGAAAGGAATAATGGTTCAGTGAATAAACCAGTAAGGAATAATGCAGATGCTAGTCCTAAGGCCGATAAACCGTTGAATTCAGCAGCATCTCAGAAGTCTAAAACGTTGAAGAGTGTATGGCGTAAAGGGGACACGGTTGCATCGGTGCAGAAGGTTGTGAAGGAAGTACCAAAGCATAATAATAACAAGAATGAAGGGGAGAAGGCTCAAACAAGGGGAGGGGAGAAGGTGGTTTCTCAAACTCGTGCTCCCCAACTGCCTTTGAAACCTCAATCGCCTTCAAAACCTCAACCGACGTTACTATCAAAACCTTCTATAGCTCCCCCACCTGTCAAGAAACCTGTTGTCTTGAGGGATAAGGGAGCAGCTGAAACATCAGTTACATCTAAAGAAAAGAAGTCACCCATCTTGATTGACAAATTTGCTTCCAAGAAACCAGTAGTTGATCCTCTAATTGCGCAAGCAGTTCTAGCCCCTCCAAAACCAGGGAAGGCGCCTCCCCCAGGAAAGTTTAAAGATGATTTCCGGAAGAAAGGTGCTCCAGCTGGGGGACCAAGAAGACGAATTTTAGAGGATGATGATGATGAGGATGCATCAGAACTCAATGTCTCTATTCCTGGTGCTGCAACAGCAAGAAAAGGAAGGAAATGGAGTAAAGCAAGTCGAAAGGCAGCACGACTCCAGGCTGCCAGGGATGCAGCTCCTGTCAAAGTTGAAATTCTAGAGGTTGGTGACAAAGGTATGCTGGTGGAGGAATTAGCCTACTGTTTGGCAACCAGTGAAGGTGAAATCCTGGGTTATCTGTACTCCAAGGGAATTAAACCAGATGGGGTACAAACAATAGACAAAGATATGGTAAAGATGATTTGCAAAGAGTATGATGTGGAAGTCATAGATGCCGATCCAGTCAAAGTTGAAGGTTTAGTGAAGAAAAGGGAAATTCTTGACGAACATGATCTTGACAAACTCAAAGACAGGCCCCCTGTTATTACTATTATGGGCCATGTAGATCATGGCAAGACAACTCTTTTGGATTATATACGGAAGAGCAAGGTAGCTGCTTCTGAAGCTGGCGGGATCACACAGGGAATTGGGGCCTATAAAGTGGAAGTACCTGTTGATGGCAAAAAGTTGCCCTGTGTTTTCCTTGACACTCCTGGGCATGAGGCATTTGGAGCAATGAGAGCTCGTGGAGCAAGCGTAACAGACATTGCTATTATTGTTGTGGCTGCCGATGATGGGATTCGTCCTCAAACAAATGAAGCTATAGCTCATGCCAAAGCAGCGGGAGTACCCATAATAATTGCAATAAACAAGATAGATAAAGATGGAGCAAATCCAGAACGAGTCATGCAAGAGCTTTCTTCAATTGGTTTAATGCCAGAAGACTGGGGTGGTGACATCCCAATGGTTCCGGTTTGTATTTCTTATTTGTTGCTATCATTTTCATATCCTGTTTATGCTTTTTTAACTTTCAAGAAGTTATATTTTTCTCTCGTACTCTTATGTCAACAGATAAGTGCTCTTAAAGGGAAGAATATAGATGATCTTTTGGAAACAGTTATGCTTGTTGCTGAGTTGCAAGAGCTGAAAGCTAATCCTGATAGAAGTGCAAAGGGAACAGTCGTTGAGGCAGGTCTAGATAAATCAAAGGGACCATTTGCTTCATTTATTGTGCAGAATGGAACCCTTAGACGGGGAAATATAGTAGTTTGTGGAGAAGCTTTTGGAAAGGTGCGGGCTTTATTTGATGATGGTGGAAAGCGGGTTGATGAAGCTACACCCTCTATACCTGTACAGGTTATTGGATTGAATAATGTTCCAATTGCTGGTGATGAATTTGAGGTTGTTGGATCCCTTGATACTGCACGTGAAAAGGCTGAGGCTCGTGCCGAGTCATTGCGTAATGAGCGTATTTCAGCAAAGGCAGGGGATGGCAAGGTCACCCTTTCTTCCTTAGCTTCGGCAGTTTCGTCAGGAAAGCTGTCTGGACTAGACTTGCACCAACTTAATATTATTTTGAAGGTTGATCTTCAGGGATCTATTGAAGCTGTCAGAAAAGCTCTGGAGGTTCTACCACAAGACAATGTCACACTGAAGTTTTTGTTGGAAGCAACAGGTGATGTAAGCACAAGTGATGTGGACCTTGCAGTTGCAAGCAAGGCCATAATTTTGGGATTTAATGTGAAAGCACCAGGCTCTGTGAAAAGCTATGCAGAGAACAAAGCTGTTGAGATTAGATTATATAGAGTTATTTATGAATTAATTGATGATGTACGAAATGCAATGGAAGGGCTCCTAGAACCTGTTGAGGAACAAGTAACAATTGGTTCAGCAGTAGTACGAGCCGTATTCAGCAGTGGTAGTGGTCGTGTTGCTGGATGCATGGTTACAGAGGGAAAAGTACTACAAGACTGTGGTATTCGAGTTAAGCGGAAGGGAAAAGTAGTTCATGTTGGTATTCTTGATTCTTTGAGACGAGTGAAGGAGATTGTTAAAGAGGTAAATGCCGGTCTCGAGTGTGGACTTGGGTTAGAAGACTTTGATGATTGGGAAGAGGGTGACATTCTTGAAGCCTTCAACACAGTTCAGAAGAGGAGGACCCTTGAAGAGGCCTCAGCATCAATGGCAGCTGCTGTGGAGGGAGTAGGAGTTGCATTGTAG 3123 0.4422 MLILVGNVQGTMSSLASPVSLGSLMGVSSSGRSHSVVRRVSLTRGNCRGRKRWHCVSLSVCRYSVTTTDFVADQGNSVSLDSNSSGSSKGGDDGAGFVLKPPPKPVLKSPENKGDPILGPPRTTGDEERNKVIESLGEVLEKAEKLGSSKVNGERNNGSVNKPVRNNADASPKADKPLNSAASQKSKTLKSVWRKGDTVASVQKVVKEVPKHNNNKNEGEKAQTRGGEKVVSQTRAPQLPLKPQSPSKPQPTLLSKPSIAPPPVKKPVVLRDKGAAETSVTSKEKKSPILIDKFASKKPVVDPLIAQAVLAPPKPGKAPPPGKFKDDFRKKGAPAGGPRRRILEDDDDEDASELNVSIPGAATARKGRKWSKASRKAARLQAARDAAPVKVEILEVGDKGMLVEELAYCLATSEGEILGYLYSKGIKPDGVQTIDKDMVKMICKEYDVEVIDADPVKVEGLVKKREILDEHDLDKLKDRPPVITIMGHVDHGKTTLLDYIRKSKVAASEAGGITQGIGAYKVEVPVDGKKLPCVFLDTPGHEAFGAMRARGASVTDIAIIVVAADDGIRPQTNEAIAHAKAAGVPIIIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVPVCISYLLLSFSYPVYAFLTFKKLYFSLVLLCQQISALKGKNIDDLLETVMLVAELQELKANPDRSAKGTVVEAGLDKSKGPFASFIVQNGTLRRGNIVVCGEAFGKVRALFDDGGKRVDEATPSIPVQVIGLNNVPIAGDEFEVVGSLDTAREKAEARAESLRNERISAKAGDGKVTLSSLASAVSSGKLSGLDLHQLNIILKVDLQGSIEAVRKALEVLPQDNVTLKFLLEATGDVSTSDVDLAVASKAIILGFNVKAPGSVKSYAENKAVEIRLYRVIYELIDDVRNAMEGLLEPVEEQVTIGSAVVRAVFSSGSGRVAGCMVTEGKVLQDCGIRVKRKGKVVHVGILDSLRRVKEIVKEVNAGLECGLGLEDFDDWEEGDILEAFNTVQKRRTLEEASASMAAAVEGVGVAL 1040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03018 1040 FunFam Translation initiation factor IF-2 687 805 - -
Pumo4g03018 1040 Hamap Translation initiation factor IF-2 [infB]. 7 1020 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Pumo4g03018 1040 ProSitePatterns Initiation factor 2 signature. 973 995 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Pumo4g03018 1040 Gene3D - 819 924 IPR036925 -
Pumo4g03018 1040 CDD mtIF2_IVc 930 1012 - -
Pumo4g03018 1040 MobiDBLite consensus disorder prediction 74 90 - -
Pumo4g03018 1040 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 470 687 IPR027417 -
Pumo4g03018 1040 CDD IF2_eIF5B 481 680 - -
Pumo4g03018 1040 SUPERFAMILY Translation proteins 687 770 IPR009000 -
Pumo4g03018 1040 MobiDBLite consensus disorder prediction 74 129 - -
Pumo4g03018 1040 Pfam Elongation factor Tu GTP binding domain 483 676 IPR000795 GO:0003924|GO:0005525
Pumo4g03018 1040 Coils Coil 770 797 - -
Pumo4g03018 1040 SUPERFAMILY Translation proteins 926 1020 IPR009000 -
Pumo4g03018 1040 CDD IF2_mtIF2_II 691 785 IPR044145 -
Pumo4g03018 1040 MobiDBLite consensus disorder prediction 227 241 - -
Pumo4g03018 1040 Gene3D Translation factors 685 803 - -
Pumo4g03018 1040 MobiDBLite consensus disorder prediction 150 166 - -
Pumo4g03018 1040 MobiDBLite consensus disorder prediction 209 225 - -
Pumo4g03018 1040 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 478 684 IPR000795 GO:0003924|GO:0005525
Pumo4g03018 1040 MobiDBLite consensus disorder prediction 320 346 - -
Pumo4g03018 1040 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 818 930 IPR036925 -
Pumo4g03018 1040 FunFam Translation initiation factor IF-2 924 1021 - -
Pumo4g03018 1040 Gene3D Translation factors 925 1021 - -
Pumo4g03018 1040 NCBIfam small GTP-binding protein domain 480 603 IPR005225 GO:0005525
Pumo4g03018 1040 Pfam Translation-initiation factor 2 819 912 IPR023115 -
Pumo4g03018 1040 PRINTS GTP-binding elongation factor signature 586 595 IPR000795 GO:0003924|GO:0005525
Pumo4g03018 1040 PRINTS GTP-binding elongation factor signature 550 561 IPR000795 GO:0003924|GO:0005525
Pumo4g03018 1040 PRINTS GTP-binding elongation factor signature 534 544 IPR000795 GO:0003924|GO:0005525
Pumo4g03018 1040 PRINTS GTP-binding elongation factor signature 482 495 IPR000795 GO:0003924|GO:0005525
Pumo4g03018 1040 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 179 1027 IPR015760 -
Pumo4g03018 1040 Gene3D - 475 631 IPR027417 -
Pumo4g03018 1040 MobiDBLite consensus disorder prediction 310 351 - -
Pumo4g03018 1040 MobiDBLite consensus disorder prediction 144 289 - -
Pumo4g03018 1040 FunFam Translation initiation factor IF-2 475 631 - -
Pumo4g03018 1040 FunFam Translation initiation factor IF-2 819 924 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03018 Pumo-Chr4 58563422 58573105 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03018 479 914 Eukaryotic Initiation Factors Gene Family AT1G21160 27.835 8.92e-28 119