Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03014 ATGACTTGTTTTCCTTTATTATTCAGTAAGTCGTCGTCTTCAGCGAGACAACACGATCCAGAAATTGATGAAGGCATTGATAATGTTAAACTCTATTCCTACAAAGAACTAAGAAATGCCACTGAAGATTTTAGTCCAGCCAATAAAATTGGAGAGGGTGGTTTTGGTTCTGTCTACAAGGGACGGCTTAAAGATGGAAAAGTTGCTGCAATAAAAGTTCTTTCAGCTGAATCAAGACAAGGGGTGAAGGAGTTCTTGACAGAGATTAATGTGATCTCCGAGATAGAGCATGAAAATTTGGTCAAGTTATATGGTTGCTGTGTGGAAAAAAATAACAGAATATTAGTCTACAATTACCTTGAGAACAACAGCCTATCACAAACTCTTCTAGGTGGAGGTCACAACAATCTCTACTTTAATTGGAGAACACGATGTAAAATAAGCATTGGGGTTGCTCGTGGGCTTGCCTTCCTTCATGAAGAAGTAAGACCTCATATTGTTCATAGGGATATAAAAGCAAGCAATATCCTCCTTGACAAAGATCTTACACCCAAAATTTCAGATTTTGGTCTGGCAAAGCTTATTCCAGCAAACATGACTCATGTCAGTACACGTGTAGCAGGAACAATAGGTTATTTGGCACCAGAGTATGCTATAGGGGGGAAGCTAACAAGGAAAGCAGACATTTACAGCTTTGGCGTCCTCCTTGTGGAGATAGTCAGTGGAAGATGTAACACAAACTCACGACTACCAATAGAAGAACAATTTCTTCTAGAGAGGACATGGGAACTTTATGAGCGAAATGAATTGGTTGGACTGGTAGATATATCACTAAACGGGGAATTCGATGCTGAGCAGGCTTGTAAGTTTCTGAAGATTGGCCTTCTTTGCACTCAAGAATCCCCAAAGCTCCGGCCATCCATGTCTTCTGTGGTCAAGATGCTCACTGGAAAAATGGATGTTGATGACAGTAAGATAACAAAACCTGCCTTAATTTCTGATTTCATGGACCTCAAAGTTAGAAAGAAAGAAGAAAGTAGTACTGATATGAAGAATTCATCTATGTATACAACCTCTTCTTCAGACAACCATGATACTACCATGTCATTTGCCACAACTACAACCTTTGCAGCAATATATGATGAAAGCATGTAA 1155 0.3939 MTCFPLLFSKSSSSARQHDPEIDEGIDNVKLYSYKELRNATEDFSPANKIGEGGFGSVYKGRLKDGKVAAIKVLSAESRQGVKEFLTEINVISEIEHENLVKLYGCCVEKNNRILVYNYLENNSLSQTLLGGGHNNLYFNWRTRCKISIGVARGLAFLHEEVRPHIVHRDIKASNILLDKDLTPKISDFGLAKLIPANMTHVSTRVAGTIGYLAPEYAIGGKLTRKADIYSFGVLLVEIVSGRCNTNSRLPIEEQFLLERTWELYERNELVGLVDISLNGEFDAEQACKFLKIGLLCTQESPKLRPSMSSVVKMLTGKMDVDDSKITKPALISDFMDLKVRKKEESSTDMKNSSMYTTSSSDNHDTTMSFATTTTFAAIYDESM 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03014 384 Pfam Protein kinase domain 47 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g03014 384 SMART serkin_6 44 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g03014 384 Gene3D Phosphorylase Kinase; domain 1 13 119 - -
Pumo4g03014 384 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 28 361 - -
Pumo4g03014 384 ProSiteProfiles Protein kinase domain profile. 44 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g03014 384 CDD STKc_IRAK 50 317 - -
Pumo4g03014 384 FunFam cold-responsive protein kinase 1 14 119 - -
Pumo4g03014 384 ProSitePatterns Protein kinases ATP-binding region signature. 50 72 IPR017441 GO:0005524
Pumo4g03014 384 FunFam cold-responsive protein kinase 1 120 331 - -
Pumo4g03014 384 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Pumo4g03014 384 SUPERFAMILY Protein kinase-like (PK-like) 26 333 IPR011009 -
Pumo4g03014 384 Gene3D Transferase(Phosphotransferase) domain 1 120 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03014 Pumo-Chr4 58499699 58504814 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03014 21 368 Receptor kinase-like Gene Family AT1G53440 50.704 2.22e-109 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pumo4g03014 Pkinase 5.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03014 - - gmx:100782320 715.301