Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03010 ATGAGCAACATAAGCATGGTAGAGGCAAAGCTGCCACCAGGGTTCAGGTTTCATCCAAGAGATGAAGAGCTTGTGTGTGATTACTTGATGAAGAAGGTGACACAAAATGATTCCCTTCTCATGATGGACGTTGACCTTAACAAGTGTGAGCCTTGGGATATTCCTGCATGTGTGGGAGGCAAGGAGTGGTATTTCTACACACAAAGAGACCGTAAGTATGCAACAGGGCTACGCACAAACCGTGCCACTGCCTCAGGGTATTGGAAGGCCACAGGGAAGGACAGGCCTATCCTCCGCAAGGGCACTCTTGTTGGTATGAGGAAGACTTTGGTGTTCTATCAAGGAAGGGCACCCAAAGGGAGAAAAACCGAGTGGGTCATGCATGAGTTTCGCATTGAAGGACCTCATGGACCTCCTAAAATTTCTTCTTCCAAGGAAGACTGGGTTTTGTGTAGGGTGTTCTACAAAAACAGAGAAGTTGCAGCCAAACCTAGCATGGGTAGCTGCTATGAGGACACAGGATCTTCATCTCTTCCTGCATTAATGGACTCTTACATCAGTTTTGACCAAACTCAAACCCATGCAGATGAGTTTGAGCAAGTGCCCTGCTTCTCCATTTTCTCTCAGAACCAAACAAACCCTATTTTCAACCACATGGCCACTATGGAGCCTAAGTTACCTGCCAACCATGCAACTGCATATGGAGTAGCACCAAATTTGGGTTACTGCTTAGACCCTCTATCCTGTGACAGAAAAGTGTTAAAAGCTGTTTTGAGTCAGATCACAAAGATGGAAAGGAATCCACTTAACCAAAGTCTAAAAGGGTCACCAAGCTTAGGAGAAGGAAGTTCAGAGAGTTACTTATCTGCTGAAGTGGGGATGCCCCACATGTGGAACAATTACTGA 906 0.4592 MSNISMVEAKLPPGFRFHPRDEELVCDYLMKKVTQNDSLLMMDVDLNKCEPWDIPACVGGKEWYFYTQRDRKYATGLRTNRATASGYWKATGKDRPILRKGTLVGMRKTLVFYQGRAPKGRKTEWVMHEFRIEGPHGPPKISSSKEDWVLCRVFYKNREVAAKPSMGSCYEDTGSSSLPALMDSYISFDQTQTHADEFEQVPCFSIFSQNQTNPIFNHMATMEPKLPANHATAYGVAPNLGYCLDPLSCDRKVLKAVLSQITKMERNPLNQSLKGSPSLGEGSSESYLSAEVGMPHMWNNY 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03010 301 Gene3D NAC domain 20 161 IPR036093 GO:0003677|GO:0006355
Pumo4g03010 301 Pfam No apical meristem (NAM) protein 12 132 IPR003441 GO:0003677|GO:0006355
Pumo4g03010 301 ProSiteProfiles NAC domain profile. 11 156 IPR003441 GO:0003677|GO:0006355
Pumo4g03010 301 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 208 - -
Pumo4g03010 301 SUPERFAMILY NAC domain 2 157 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03010 Pumo-Chr4 58401960 58406830 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03010 2 299 NAC Transcription Factor Family AT1G56010 59.119 1.08e-121 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo4g03010 NAM 3.3e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03010 - - gmx:100301890 575.089