Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02994 ATGGCGAAACCTGGGCGAGGTCGTCGCTCTCCCTCCGGTTCCGTTTCCGGCTCCTCCTCTCGCTCCTCTTCCGGCTCCTCCTCTCGTTCTCGCTCGCGCTCGCGCTCCATCTCTCGTTCCCGTTCTCCCTCGCGCTCCAAATCCTTCTCTTCCTCCTCCTCCTCTCCCTCCCGCGGCTCCCGCGGCTCCCGCAGCCGCAGCCCTCCCCTGCAGAGGCGCAGAAGTCCTGCTGAAGCAGCTAAGCGAGGTCGGTCTCCTCCACCTAAGAGAGCTTCTCCTCCTCAAAGGAAACCTTCTCCTGTACGCGAATCACTTGTTCTTCATGTAGAAAAGCTCAGCAGAAATGTCAATGAAGGCCATTTGAAAGAAATTTTCAGTAACTTTGGTGAGGTTGTAAGTGTGGAGTTGGCAATGGATCGAACTGTCAATCTTCCAAAAGGATATGGATATGTGCAGTTCAAGACAAGAGGGGATGCTGAAAAAGCATTATTGTATATGGATGGTGCCCAAATAGATGGCAATGTCATCAAGGCAAGATTTACTCTACCTCCAAGACAGAAAGTTTCACCACCCCCAAAGGTTAATGCTGTTGCTCCAAAGAGAGAGACCCCTAGGAGTGATAATGCTAGTGCAGATGTTGACAAGGATGGGCCAAAGCGTCCCAGAGAATCTCCTCGTAGAAAACCTCCTCCCTCACCACGGAGGAGATCTCCTGTACCTCGAAGAGCTGGATCTCCAAGACGACCAGATTCTCCTCGCCGTCGTGCAGATTCTCCTGTCCGTCGCCGATTAGACTCTCCTTATCGTCGTGGAGGAGACACGCCTCCTAGGAGGCGGCCTGTGTCTCCTGGAAGAGGTCGTTCTCCATCTCCACCAAGACGCCTTAGATCCCCTGCAAGGGTCTCACCTAGAAGGATGCGTGGAAGCCCAGGCCGGAGACGTTCACCTCCTCCTCCCCCAAGGCGCCGATCACCACCTAGACGACCTCGTAGTCCTCCTAGAAGGTCTCCAATCGGTCGTAGACGTACTCGCTCTCCAATACGTAGGTCTGCACGCTCACGCTCAAGGTCATTCTCACCTCGCAGAGGTAGACCACCTGTTAGACGTGGGAGGTCATCATCCTACTCTGATTCACCAAGTCCACGCAAGGTATCCCGGAGATCAAAGAGTCGTAGCCCAAGAAAGCCGTTGAGAGGAGGAAGAGGCAGTAGCAACAGCAGCAGCAGCAGTTCACCACCACCAGCTCGCAAACCATAG 1257 0.5449 MAKPGRGRRSPSGSVSGSSSRSSSGSSSRSRSRSRSISRSRSPSRSKSFSSSSSSPSRGSRGSRSRSPPLQRRRSPAEAAKRGRSPPPKRASPPQRKPSPVRESLVLHVEKLSRNVNEGHLKEIFSNFGEVVSVELAMDRTVNLPKGYGYVQFKTRGDAEKALLYMDGAQIDGNVIKARFTLPPRQKVSPPPKVNAVAPKRETPRSDNASADVDKDGPKRPRESPRRKPPPSPRRRSPVPRRAGSPRRPDSPRRRADSPVRRRLDSPYRRGGDTPPRRRPVSPGRGRSPSPPRRLRSPARVSPRRMRGSPGRRRSPPPPPRRRSPPRRPRSPPRRSPIGRRRTRSPIRRSARSRSRSFSPRRGRPPVRRGRSSSYSDSPSPRKVSRRSKSRSPRKPLRGGRGSSNSSSSSSPPPARKP 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02994 418 SMART rrm1_1 106 179 IPR000504 GO:0003723
Pumo4g02994 418 MobiDBLite consensus disorder prediction 298 368 - -
Pumo4g02994 418 Gene3D - 6 189 IPR012677 -
Pumo4g02994 418 MobiDBLite consensus disorder prediction 399 418 - -
Pumo4g02994 418 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 177 IPR000504 GO:0003723
Pumo4g02994 418 MobiDBLite consensus disorder prediction 182 418 - -
Pumo4g02994 418 MobiDBLite consensus disorder prediction 1 103 - -
Pumo4g02994 418 MobiDBLite consensus disorder prediction 11 33 - -
Pumo4g02994 418 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 105 183 IPR000504 GO:0003723
Pumo4g02994 418 MobiDBLite consensus disorder prediction 246 276 - -
Pumo4g02994 418 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 3 270 - -
Pumo4g02994 418 FunFam Serine/arginine-rich splicing factor SR45 3 190 - -
Pumo4g02994 418 MobiDBLite consensus disorder prediction 41 70 - -
Pumo4g02994 418 SUPERFAMILY RNA-binding domain, RBD 91 191 IPR035979 GO:0003676
Pumo4g02994 418 CDD RRM_RNPS1 107 179 IPR034201 -
Pumo4g02994 418 MobiDBLite consensus disorder prediction 205 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02994 Pumo-Chr4 58158238 58163809 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02994 107 180 Eukaryotic Initiation Factors Gene Family AT2G23350 33.784 2.09e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02994 K14325 - gmx:100783566 302.753