Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02981 ATGAATGACCAGAATGGTAAGTTGTGGCCCATGTTGCAAAAGCTTGGGGTGAGCTTGAAGTTAGAGAAGGAGTTGACAGGGAAGGCTTTGATGAAGTGTGTTATGCAAAGATGGCTCCCAGCAAGTAGTGCCATTCTTGAGATGATGATATTTCACCTTCCATCTCCTGCTAGTGGTCAAAAATATAGAGTTGAGAATTTGTATGAGGGTCCCCTTGATGACCCTTATGCTTCTGCTATCAGAAATTGTGACCCTGAAGGGCCTCTAATGCTTTATGTTTCAAAGATGATTCCTACCTCTGATAAGGGTAGGTTTTATGCTTTTGGCAGAGTCTTCTCTGGTAAGGTGTCAACTAGTATGAAGGTTAGAATTATGGGGCCAAATTTTGTCCCTGGGGAAAAGAAAGACCTGTATGTGAAGAGTGTTCAAGGGACTTCCAATTGGATGGGGAAGAAATATGAAACAGTTGAGGATGTTCCTTGTGGAAACACAGTTGCCTTGGTTGGTTTGGACCAATTCATCACCAAGAATGCCACTATTACAAATGAGACAGAAATTGAAGCACACCCTGTTAGAGCTATGAAGTTTTCTGTGTCACCAGTGGTAAGTGTGGCTGTTAATTGCAATTCTGCATCAGAACTTCCTAAGCTTGTTGAGGGCCTAAAATGTTTGGCAAAGTCAGACCCTATGGTGATGTGCACAATTTCAGAGACAGGAGAACACATCATAGGTGCTGCTGGTGAGCTGCATCTTGAAACCTGTGTGAAAGACTTGAAGGATGGTTTTATGAATGGGGTAGAGATCTCAATATCTGACCCTATTGTCTCCTTCAAGGAGACAGTGCTGGAGAAGTCTTGCCACACGGTGATGAGCAAGTCACCAAACAAACACAACCGTTTGTACATGGAAGCAAGGCCAATGGAGGAAGGGCTTGTGGAGGCCATTGAGAGAGGCAAGATTGGATCTAGCCAAAAGAGCATATGGTGTTTTGGCCCTGAGACAATTGGACCCAACATGGTGGTGGATGCATGCAAGGGTGTTCAGTACCTCAATGAAATCAAGGAGGCTGTCACTGCTGGCTTTCAGATAGCATCAAGAGAAGGTCCACTTGCCGAAGAGAACTTGAGAGGGGTATGCTTTGACCTTTGTGATGTTGTTCTTCATGCTGATACAATCCATAGGGGAGGTGGCCAAATCATTCCAACTGCTAGAAGAGCTTTCTATGCTGCCATGCTTTCAGCCAAGCCAAGACTACTTGAGCCTGTGTATGTGGTGGAAATACAAGCACATGAAGAGGCTCTTGGTGGCATCAATAGTGTTGTTAACAAGAAAAGAGGGCATGTGTTTGAGGAAATTCAGAGGCCTGGCACCCCATTTTACAATGTCAAAGCATATATACCAGTGATTGAGTCATTCAAATTCAGTGAAACACTGAGGACTCAAATTGGAGTGCAGGCTTTCCCACAAATGGTGTTTGATCACTGGAATATGGTGCAGTCTGATCCACTTGAACCTGGAACACCAGCTGCTGCATGTGTTGCTGAGATTCGGAAGAAGAAAGGGTTGAATGAACAAGTTATGCCTCTCTGTGTGTTCGAGGACATGCTTTGA 1611 0.4444 MNDQNGKLWPMLQKLGVSLKLEKELTGKALMKCVMQRWLPASSAILEMMIFHLPSPASGQKYRVENLYEGPLDDPYASAIRNCDPEGPLMLYVSKMIPTSDKGRFYAFGRVFSGKVSTSMKVRIMGPNFVPGEKKDLYVKSVQGTSNWMGKKYETVEDVPCGNTVALVGLDQFITKNATITNETEIEAHPVRAMKFSVSPVVSVAVNCNSASELPKLVEGLKCLAKSDPMVMCTISETGEHIIGAAGELHLETCVKDLKDGFMNGVEISISDPIVSFKETVLEKSCHTVMSKSPNKHNRLYMEARPMEEGLVEAIERGKIGSSQKSIWCFGPETIGPNMVVDACKGVQYLNEIKEAVTAGFQIASREGPLAEENLRGVCFDLCDVVLHADTIHRGGGQIIPTARRAFYAAMLSAKPRLLEPVYVVEIQAHEEALGGINSVVNKKRGHVFEEIQRPGTPFYNVKAYIPVIESFKFSETLRTQIGVQAFPQMVFDHWNMVQSDPLEPGTPAAACVAEIRKKKGLNEQVMPLCVFEDML 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02981 536 Gene3D Translation factors 56 197 - -
Pumo4g02981 536 Gene3D - 282 412 IPR014721 -
Pumo4g02981 536 FunFam Translation elongation factor 2 199 276 - -
Pumo4g02981 536 CDD EF2_II 88 183 - -
Pumo4g02981 536 Pfam Elongation Factor G, domain III 200 263 IPR041095 -
Pumo4g02981 536 Gene3D - 413 522 - -
Pumo4g02981 536 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 4 528 - -
Pumo4g02981 536 SUPERFAMILY EF-G C-terminal domain-like 420 522 IPR035647 -
Pumo4g02981 536 Gene3D Elongation Factor G (Translational Gtpase), domain 3 198 276 - -
Pumo4g02981 536 Pfam Elongation factor G C-terminus 417 503 IPR000640 -
Pumo4g02981 536 Pfam Elongation factor Tu domain 2 106 180 IPR004161 GO:0005525
Pumo4g02981 536 CDD eEF2_snRNP_like_C 420 498 - -
Pumo4g02981 536 CDD aeEF2_snRNP_like_IV 272 423 - -
Pumo4g02981 536 FunFam Translation elongation factor 2 416 536 - -
Pumo4g02981 536 SMART EFG_IV_2 304 415 IPR005517 GO:0005525
Pumo4g02981 536 SUPERFAMILY Ribosomal protein S5 domain 2-like 275 419 IPR020568 -
Pumo4g02981 536 Pfam Elongation factor G, domain IV 321 415 IPR005517 GO:0005525
Pumo4g02981 536 SMART EFG_C_a 417 506 IPR000640 -
Pumo4g02981 536 SUPERFAMILY EF-G C-terminal domain-like 197 273 IPR035647 -
Pumo4g02981 536 FunFam Translation elongation factor 2 56 197 - -
Pumo4g02981 536 SUPERFAMILY Translation proteins 55 190 IPR009000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02981 Pumo-Chr4 57994261 57995921 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02981 1 536 Eukaryotic Initiation Factors Gene Family AT1G56070 73.070 0.0 856
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02981 K03234 - gmx:100790826 993.801