Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02976 ATGGGTGTGAATGAAAATTTCAACAAAGATGATGATGATCATCATGAGTATGTGGATGATGATGATGATGTTCCTCTTCCGGGGTTTCGATTCCACCCCACAGATGAAGAACTTGTTAGTTTCTATCTTCGAAGGAAGCTTGACAAGAAACCCATCAGCATCGACCTCATCAAACAGATTGATATTTACAAACACGATCCTTGGGATCTTCCAAAAACCAGTGCCACTGGATTAGGAGAGAAAGAAGGGTACTTCTTTTGCAGAAGAGGAAGGAAGTATAGGAACAGCATAAGGCCTAACAGAGTCACTGGCTCAGGGTTCTGGAAAGCAACTGGCATAGACAAACCAGTTTACTCACATGGAGGAGAAGGCAATGATTGCATTGGACTCAAGAAAACTCTAGTGTACTACCGTGGCAGTGCAGGCAAAGGCATCAAAACTGATTGGATGATGCATGAGTTTCGCCTTCCTTCTAACACAGACAACAGCACAAACCTTCCCAACTCCAAGAATTACGTAGACATTCCCCAAGAAGCTGAAATTTGGACATTGTGTCGAATTTTCAAGAGAAATGTCTCACATAGGAAGCTCACGCCAGACTTGAAACAATTATCTGCTAAGCGCCATTCCATTAATGACGAGAGCTGCAATGTGGAGTTCAACACTAATCAAGAATCATATATAAACTTTGGTGGCCACTATCACAATGAGCAGAAACCCGTGATTAACTTCACAAACAGTGATCAAAGGAATAATCAGTATCATCGTGTGATGACTCAGTTGTGTGCTCCAGTAGTGGCACAGCAGCAACCTCAACAACTAACTTCACCATCTTCTAACTTTTGGATTAACAACCCTCCTGGGAACGACTTCTTCACGTTTGATAACTGGGATGAGCTTGGATCTGTAGTGAAGTTTGCTGTTGATTCGCCTAGCTTGTAG 942 0.4257 MGVNENFNKDDDDHHEYVDDDDDVPLPGFRFHPTDEELVSFYLRRKLDKKPISIDLIKQIDIYKHDPWDLPKTSATGLGEKEGYFFCRRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSHGGEGNDCIGLKKTLVYYRGSAGKGIKTDWMMHEFRLPSNTDNSTNLPNSKNYVDIPQEAEIWTLCRIFKRNVSHRKLTPDLKQLSAKRHSINDESCNVEFNTNQESYINFGGHYHNEQKPVINFTNSDQRNNQYHRVMTQLCAPVVAQQQPQQLTSPSSNFWINNPPGNDFFTFDNWDELGSVVKFAVDSPSL 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02976 313 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 24 247 - -
Pumo4g02976 313 SUPERFAMILY NAC domain 26 190 IPR036093 GO:0003677|GO:0006355
Pumo4g02976 313 FunFam NAC domain-containing protein 35 34 193 - -
Pumo4g02976 313 Pfam No apical meristem (NAM) protein 27 156 IPR003441 GO:0003677|GO:0006355
Pumo4g02976 313 ProSiteProfiles NAC domain profile. 25 190 IPR003441 GO:0003677|GO:0006355
Pumo4g02976 313 Gene3D NAC domain 34 194 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02976 Pumo-Chr4 57893914 57896508 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02976 11 199 NAC Transcription Factor Family AT5G39820 57.426 6.21e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo4g02976 NAM 4.4e-34 No_clan