Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02972 ATGGATAGTGAATTTTGGAGCAGTGACACGACGAGAGATTTTACTTGGGCAGTTGACAGTGCGATAAGGAGCGAGACTGCATCAAGTTTGGGAGCATCCCCTATCCGTAGTTTTTCTTCGGTAGTGGACAGTGCCATAAGGAGTAGGACTGCGTCATATTTGGGAGCATCCCGTTTCCATAGTTTTGCTTCGACGGTGTCGAGTCGGACAGGAGATGTTGCTACACGATTATTCACCTCGGGTGCTCTTAAAGCAGCCACCAACAATTTCCCAGATGAAAACAAGATTGGTGCTGGAAACTTTGCTGTTGTGTACAGAGGCAAACTCCCTGGTGGTCGTGAGGTGGCAATCAAGAGGGGCGAAAGTATCTGGTTCAATCTTTGCGCATTTAAGTCTGAATTGGCCTTCTTGTCCCACCTACACCACAGGAACTTGGTTGGACTAGTTGGCTTCTGTAAAGAGAAAAATGATAGGCTCTTGGTGTACGAGTACATGGAAAATGGATCGTTGTATTATCATTTGCATGACAAGAACAATGTGGACAAGGGTAGCAGTGTGTTGAATTATTGGAAAATGAGGATCAAGATTGCTTTGGATGCTTCCCGGGGAATAGATCATCTTCATAACTGCGCAGTTCCGTCTATTATTCACAGACGTATCAAGTCTTCCAATATTCTTATTGATGGCACTTGGACGGCAAAAGTATCTGATTTTCGATTGTCGTTCATGAGTCCAGATCAACCTGACCCTGATTATCCTTCAAAGGACATATGGGGATCCTTTGGATACTCAGATCCTGAGTACTTTAGTCTAAATGTGGTGACCACAAAGAGTGATGATGTGTATGGGTTTGGAGTTGTACTGCTTGAACTTTTAACGGGAAAGACAGAAGTATTCAAGTCTAGGGAAGATATAGGTACCCAATTGGTGAACTTTGCAGTGCCTGCTATTTTGGCTGGAGAATTGGAGAAAATTTTGGATCCAAGGGTTGGACCACCCGTTGTGTATGAAGCAGAGGCACTGGAGTTAGTGGCCTAA 1038 0.4441 MDSEFWSSDTTRDFTWAVDSAIRSETASSLGASPIRSFSSVVDSAIRSRTASYLGASRFHSFASTVSSRTGDVATRLFTSGALKAATNNFPDENKIGAGNFAVVYRGKLPGGREVAIKRGESIWFNLCAFKSELAFLSHLHHRNLVGLVGFCKEKNDRLLVYEYMENGSLYYHLHDKNNVDKGSSVLNYWKMRIKIALDASRGIDHLHNCAVPSIIHRRIKSSNILIDGTWTAKVSDFRLSFMSPDQPDPDYPSKDIWGSFGYSDPEYFSLNVVTTKSDDVYGFGVVLLELLTGKTEVFKSREDIGTQLVNFAVPAILAGELEKILDPRVGPPVVYEAEALELVA 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02972 345 ProSiteProfiles Protein kinase domain profile. 90 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g02972 345 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 74 345 IPR044815 GO:0004674
Pumo4g02972 345 ProSitePatterns Protein kinases ATP-binding region signature. 96 118 IPR017441 GO:0005524
Pumo4g02972 345 Gene3D Phosphorylase Kinase; domain 1 55 164 - -
Pumo4g02972 345 Gene3D Transferase(Phosphotransferase) domain 1 165 344 - -
Pumo4g02972 345 SUPERFAMILY Protein kinase-like (PK-like) 66 328 IPR011009 -
Pumo4g02972 345 Pfam Protein kinase domain 92 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02972 Pumo-Chr4 57765441 57766718 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02972 78 345 Receptor kinase-like Gene Family AT3G55950 59.298 5.50e-94 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Pumo4g02972 Pkinase 8.5e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02972 - - vra:106757659 363.614