Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02970 ATGAAGGAGAGTGGTAGAAAACAAGGTACCATGTCGCCATGTGCGGCTTGCAAGCTTCTTCGAAGGAGATGCACGCGAGATTGCGTGTTTGCTCCTTATTTTCCTGCTGATGAACCCCAGAAGTTTGGTAGTGTTCACAAGGTTTTCGGGGCTAGCAATGTAAACAAAATGTTACAGGAATTACCTGAAAACCAAAGAAGTGATGCTGTTAGTTCCATGGTATATGAAGCCAATGCAAGGGTGAGGGACCCTGTGTATGGATGTGTGGGAGCCATATCCTCTCTTCAGCAACAAGTTGATGTGCTCCAAACCCAATTGGCACTGGCACAAGCAGAGGTTGTGCACATGAGAATGCGCCAATTCTCACCACCATCAGATCAACAACAACAACAACAACAACAACCCTCATCACTAGTTGTGCCTCCTGAACCCTCCAATTCATCATCAGAGAACTTGTACCAATCAAGCACCAGGCTCTTTTCTTCAAACACCAAGTCCCTTTTTGGCATGGACATGGTCGTTGATCAGGCCAACATGGGGCAATCCTTGTGGTCATACTAG 561 0.4652 MKESGRKQGTMSPCAACKLLRRRCTRDCVFAPYFPADEPQKFGSVHKVFGASNVNKMLQELPENQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQVDVLQTQLALAQAEVVHMRMRQFSPPSDQQQQQQQQPSSLVVPPEPSNSSSENLYQSSTRLFSSNTKSLFGMDMVVDQANMGQSLWSY 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02970 186 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
Pumo4g02970 186 Coils Coil 92 112 - -
Pumo4g02970 186 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Pumo4g02970 186 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 10 146 - -
Pumo4g02970 186 MobiDBLite consensus disorder prediction 121 154 - -
Pumo4g02970 186 MobiDBLite consensus disorder prediction 120 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02970 Pumo-Chr4 57700785 57705658 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02970 1 185 AS2 family AT1G31320 65.405 2.66e-70 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pumo4g02970 LOB 4.6e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02970 - - gmx:100803188 269.626